Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0002 ATGGCGATGTTTTCCGTGAAAGCGCGGCTATTTCTGGCTTTCTTCTTTGTTATTGGAATTCATAACATCTTCTCCTACACAGATCCGAATGATGTTGAAATCCTGTTATCGTTGAAAGAGGTATGGAAAAATACGCCACCGACATGGAGGACATCAAGCGATCCATGTGGAGATCTCTGGGAAGGAGTCAGTTGCAACGATTCTAGAGTCACTGAATTAAAATTACCCTATATGGGCCTTGAAGGCCATCTTAGTGGTGACATTGGAGGCCTTACTGAACTAATAACATTGGACCTGTCATTTAATAGATATCTCACTGGTCCACTCTCTCCTAGGTTGGGGGATTTGCGAAATTTGAAGACCTTAATTCTAGCTGCATGTGGCTTCAGTGGTAATATTCCCCAAGAGTTGGGAAACCTTACTCAGTTGATGTCCTTTCTTGGAAAGCTCTCCAAACTGGTTTTGCTAGACTTGATGGAGAATCAGTTGAATGGATCTCTCCCTGTCTCAACTTTTGATTCACCAGGTCTGGACCTTCTTCTCCAAGCAAAGCACTTTCACTTGAGCAAGAACAGGCTGTCAGGCTCTATACCTCCTAAGCTTTTTAGCGCTGATATGAAATTAATACACATAGTATTTGACCAGAATCAGTTTTCTGGGAGTATTCCACAAACCTTGGGACTTGTTAACACCCTTGAACTTCTCCGACTTGATAGGAATTCTCTAACAGGAATTGTCCCATCAGATCTTACCAACTTAAAACAAATCCTTCAGTTGAATTTAGCACACAATAATCTGACAGGGCCGTTGCCAAATTTAACTCAAATGACTTCACTATGTGTTGTGGACCTTAGTTACAACTCATTTGATGCATCAACAGCCCCAGATTGGTTCTCAAGCTTACCATCTCTCACCAGTTTGATCGTTGAATATGGGGAACTGGAAGGACCTGTCCCAGAAACAATCTTTAGCTTACCACAGATACAACAAATAAAACTGGGCCACAATTTATTTGGTGGGATATTGAGGATGGGTGGTAACATCAGTCAGCATCTGGAGCTTGTTAATTTGGAAGACAATCATATTACCCAATTTGAATTATTATCTGGATATAACAAAACTTTGATGCTTGAAGGAAATCCTGCGTGCAACAATAATGTTGATCCCCTCGTGAAACAAAATCATTATTGCCTACGTAATTCACAACCAGCTGATCTAAAGCCTAATTTTGGGAGTCCAGTACTCAACTGTGAAACTAGATTGTGCTCTAATGGCGAGAAGAATAACCCTCAAAACTGTGAATGTCAATATCCCTTTGTAGGGTCTTTCTACTTCAGAGGGCCCTCCATCAGAGACTTGTCTAATGACACCTTGTTTCAGTTACTGAAATACAGCCTCTCCAACAAACTAAATCTTTCTATTGCTTCAGTTGTTATTCAAAAGCCTGTGTTTGAAAGTGATGATTACCTTCACATTCAACTTCAACTTTTTCCACCCTTTGGAAAATATTTCAATCGTTCAGAAATTTTGAGGATTGCGTCTGCGTTGAGTTATCAAACTTTCCTTCTTTCCCCTGATTTAGGATCATTTTATTTCATTCCACTTGATCAGTACAATTTTTTAGCTCCAGATGTTGGAAATTTTAGTAGCATTAGCAACAGGTGGCTTATTGGGATTGCAATTGGTTGTGGCTTACTGCTCCTAACCCTATTTGGAGTTGGAGTATATGCAATTAAGCAGAAGAAAAGAGTATCAAAAGCGATTTCATTGAGCAAGCCATTTGCGTCCTGGTCATCTATTGAACAAATAACTGGAGAAGCACCACAATTAAAGGGAGCCATATATTTTTCTTATGATGAGCTTAGGAAGTTGACAAATAATTTCTCCATAAGTAATGAGATTGGAGCTGGAGGATATGGGAAGGTCTATAGAGGAATTACTGGGTATGGACAAGTTTTCGCAATCAAAAGAGCTAGGCAAGGCTCGAAACAGGGTGCACATGAGTTTAAGACTGAGATTGAATTGCTTTCACGAGTTCATCATAAGAATCTCGTTGGCCTTGTAGGATTTTGTTGTGAACAGGGAGAACAGATGCTTGTTTATGAGTTCATGCCTTATGGATCGCTTCGTGACATCCTTGGGAGTTGTGTCCATCTTGATTGGAAGAGAAGACTTGAGATAGCACTTGACTCTGCAAGAGGACTAGCTTACCTTCACGAGTTTGCAAATCCTCCAATAATCCATAGAGATATTAAGTCCTCCAATATTCTTTTAGATGAATATTTTAATGCGAAGGTTGCAGATTTTGGCCTGTCCAAGCTTGTATTTGACCATGAAAAGGGACATATTTCTACTGGAGTTAAAGGCACGTGGGGGTATTTAGATCCTGAATATTACACAACGCAACGATTAACTGAGAAGAGTGATGTGTACAGCTTTGGAGTTGTTATGCTTGAATTGATTACTTCTAATCGGCCAATTGAGAAAGGGATATATTTAGTTCATGAAGTGGTTCGACTAATGAACAAGAGCGACAAAGCATATTACGGATTGATGAATATAATAGATGCAACTGTTATAAATGAGATGACAAATCCAATTGAATTTGGAAGGTTTTTAGAGTTGGCCATAAAATGTGTTGAAGAATCAACTATAAATCGCCCCACGATGAGCCAAATGAAGACTTACAAAGATAGGGTCACAAGGAAGGCAAAGGCCCAAGCTTGCATATATGCAGCAGTGGCTCCTGTTGTATTTAACAGAATCATGGCCTTGAAGTTAACAAAGGAGATCTGTGAATTCCTCAAAGTAAAGGCAGTGCATGCAAGCACTGTGAGAAGCAGAATCATCCACACTTTAGATGCTGGAGAACGCCAGATGTGA 2883 39.89 MAMFSVKARLFLAFFFVIGIHNIFSYTDPNDVEILLSLKEVWKNTPPTWRTSSDPCGDLWEGVSCNDSRVTELKLPYMGLEGHLSGDIGGLTELITLDLSFNRYLTGPLSPRLGDLRNLKTLILAACGFSGNIPQELGNLTQLMSFLGKLSKLVLLDLMENQLNGSLPVSTFDSPGLDLLLQAKHFHLSKNRLSGSIPPKLFSADMKLIHIVFDQNQFSGSIPQTLGLVNTLELLRLDRNSLTGIVPSDLTNLKQILQLNLAHNNLTGPLPNLTQMTSLCVVDLSYNSFDASTAPDWFSSLPSLTSLIVEYGELEGPVPETIFSLPQIQQIKLGHNLFGGILRMGGNISQHLELVNLEDNHITQFELLSGYNKTLMLEGNPACNNNVDPLVKQNHYCLRNSQPADLKPNFGSPVLNCETRLCSNGEKNNPQNCECQYPFVGSFYFRGPSIRDLSNDTLFQLLKYSLSNKLNLSIASVVIQKPVFESDDYLHIQLQLFPPFGKYFNRSEILRIASALSYQTFLLSPDLGSFYFIPLDQYNFLAPDVGNFSSISNRWLIGIAIGCGLLLLTLFGVGVYAIKQKKRVSKAISLSKPFASWSSIEQITGEAPQLKGAIYFSYDELRKLTNNFSISNEIGAGGYGKVYRGITGYGQVFAIKRARQGSKQGAHEFKTEIELLSRVHHKNLVGLVGFCCEQGEQMLVYEFMPYGSLRDILGSCVHLDWKRRLEIALDSARGLAYLHEFANPPIIHRDIKSSNILLDEYFNAKVADFGLSKLVFDHEKGHISTGVKGTWGYLDPEYYTTQRLTEKSDVYSFGVVMLELITSNRPIEKGIYLVHEVVRLMNKSDKAYYGLMNIIDATVINEMTNPIEFGRFLELAIKCVEESTINRPTMSQMKTYKDRVTRKAKAQACIYAAVAPVVFNRIMALKLTKEICEFLKVKAVHASTVRSRIIHTLDAGERQM 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1179560 1194100 - CaPI482276_02g000020.1 Cam02g0002 119744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0002 960 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Cam02g0002 960 CDD STKc_IRAK 634 892 - -
Cam02g0002 960 ProSiteProfiles Protein kinase domain profile. 628 900 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g0002 960 Gene3D Phosphorylase Kinase; domain 1 594 703 - -
Cam02g0002 960 SMART serkin_6 628 901 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g0002 960 ProSitePatterns Protein kinases ATP-binding region signature. 634 656 IPR017441 GO:0005524(InterPro)
Cam02g0002 960 FunFam Predicted protein 175 392 - -
Cam02g0002 960 Pfam Leucine Rich Repeat 232 253 IPR001611 GO:0005515(InterPro)
Cam02g0002 960 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515(InterPro)
Cam02g0002 960 Pfam Protein tyrosine and serine/threonine kinase 630 893 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam02g0002 960 ProSitePatterns Serine/Threonine protein kinases active-site signature. 746 758 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam02g0002 960 SUPERFAMILY L domain-like 273 383 - -
Cam02g0002 960 Gene3D Ribonuclease Inhibitor 30 144 IPR032675 -
Cam02g0002 960 FunFam Leucine-rich repeat receptor-like protein kinase 704 908 - -
Cam02g0002 960 SUPERFAMILY Protein kinase-like (PK-like) 610 895 IPR011009 -
Cam02g0002 960 Gene3D Ribonuclease Inhibitor 145 381 IPR032675 -
Cam02g0002 960 PANTHER RECEPTOR-LIKE PROTEIN 55 42 893 - -
Cam02g0002 960 SUPERFAMILY L domain-like 34 289 - -
Cam02g0002 960 Gene3D Transferase(Phosphotransferase) domain 1 704 915 - -
Cam02g0002 960 FunFam receptor-like protein kinase FERONIA 595 703 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0002 Cam-Chr2:1179560 Cam10g1357 Cam-Chr10:27096260 1.60E-248 dispersed
Cam02g0002 Cam-Chr2:1179560 Cam10g2256 Cam-Chr10:35750819 2.60E-280 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84934 PF07714 PK_Tyr_Ser-Thr 6.90E-44 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0002 - - - 0.0