Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0010 ATGATCCATTCTTCTTTGCTTGCAGCTTTTGCAGCCTCAGAAGCCATGCCTCTTTCTAAAGGAGGTACTCCCATGTTTTCAATGCTTTATAGATGGAACCCCTTAAGACTGATCATTCAGGGGCTGCTACTGTTCTCGTTGTTGAGGTCGAATCATGCATCAACGGATCCTGATGTGGAAGGAGAAGCTTTGGTTGACTTGTTAGGGGCACTGAATGATTCCAATCATCAGATTACTGATTGGAATTATCATCTTGTAAGCCCTTGCTTTAGTTGGTCGCATATTACCTGCAGAAATGGAAATGTCATATCCTTGAGCTTGGGTTCAGTAGGATTTTCAGGATCACTTTCTCCCTCAATTACCAAACTGAAGTATTTGGCTAGCCTGGATTTGCAGAACAATAATATAGCTGGTGTTATACCAGATTATCTAGCTAACATGACCCACCTACAGAATTTGAATCTTGCTAATAATAACTTCAATGGCCCTATACCTGCAGCTTGGGATCGACTTGTCGGTCTAAAGCATCTGGATCTCTCAGATAACAACTTAACAGGAGAAGTTCCAGCGCAGTTCTTTTCAATTCCAATGTTCAACTTTTCAGGAACTGGTTTAAATTGTGGGTTTAGGTTGGATAAACCTTGTGTTTCGACATCTCCCCATCGAGCTTCTGCAAAGAATTCAAAGTTTGGGGTAGTGGCGAGTACTGCAAGTTGTGGGGGTTTCATACTTCTGTCAATTGGTGCCTTCTTTGCTTATAGATGCTTCTACGTGCATAAGCTTAAGGATCCTATGTTTGTTGATGTTGCTGGTGAAGATGAATGTAAACTTTGCTTTGGGCAAATCAGAAGATTTTCATTGCGGGAAATCCAACTTGCTACCGATAACTTTAACGAAGCAAACATCATTGGCCAAGGAGGCTTTGGAAAAGTATATAAAGGCATCCTCTCGGATGCCTCCAAGGTGGCTGTGAAACGGTTAACAGACTACAATAGTCCTGGCGGGGAGGCTGCATTCCTAAGAGAAGTTCAACTAATAAGTGTTGCGGTGCATAGAAATCTCCTCCGGTTGATTGGGTTCTGCACAACCACATCTGAGAGAATCCTCGTTTATCCATTCATGCAGAATCTTAGCGTGGCACATCGCCTGAGAGATTTAAAACCTGGAGAAAGAAGCTTGGACTGGGCCACGAGGAAACGAATTGCTTTCGGTGCAGCTCATGGTTTGGAGTATTTGCATGAGCACTGTAATCCTAAGATCATTCATCGCGATCTGAAGGCTGCGAATATCTTATTAGACGATGACTTTGAAGCTGTTCTTGGAGATTTCGGGCTGGCTAAGCTAGTTGATACTAAAGTGACTCATATTACCACTCAAGTGCGTGGTACGATGGGTCACATTGCCCCAGAATACCTGTCCACTGGAAAGTCGTCCGAAAAGACAGATGTTTTTGGATATGGTATCACCCTTCTTGAACTTGTCACTGGCCAGCGAGCAATAGATTTCTCCCGCCTCGAAGAGGAGGAAGATGTTCTTCTACTTGATCATATAAAGAAGTTGCAGAGGGAGAATAGGCTTGAAGATGTGGTGGACAAAAACTTAAGAAGCTACGATGAGAAAGAAGTTGAAAACATAGTTCAGGTAGCACTGCTTTGCACTCAAAGCTCACCCGAGGACCGACCCACAATGGCGGAAGTTGTGAATCTACTACATGGAGAAGGGCTGGCAGATAGGTGGGCAGAGTGGATGCAGCTTGAAGAGGGTTGTTGGGAGCATGGAAATGGAAACCTAGGACTGAGTAGCTCTGTCACTGTTGTCTGTCTCTCAAAAAATGGAGCAGATGGACATTTGATTGGTTCGTTCTTCTTCTCCTCCCTTGATCCTGTGGCCACTGCCGAATTCAATTTAATGTTATGGGGAGAAGTGTTTCAAGGTCTCCGTCGTACACTCACCGCTCCACTTCCCATCGCCATAGTCGGAGAAGCAGAAGGGACCGAACTCCTTCTCCCTATTACTCCAATTCCCATTCCAGGAGAAGGAGCCGTTCCACCTCCCTTCGCCGCCGTCGAAGTCCTTCCCCTTCCTACCGTCGTCGTAGAAGTCGCTCTCCCACTCCACGGAGACGCCGCCGACGCAGAAGTAGACAAGCTTAAGAAAGAGGAAGAAGAGAAGAAAAGGCGTGAAGAAGAGTCGAAGAAGTTAGAAGAAGATGCAGCTAGGAGGTTGGAAGAATTAATTCAGAAGAATGTTCAAGAAATACTAAACTCTGAAGAGACTAGATTAGAAATACAAAGGCGAATAGAGGAAGGTCGCAAGAAATTGTTTGATGATGTTGATCTGCAACTTGCGAAAGAGAAAGAAGCCGCTCTTACTGCTGCAAGACAGAAAGAAGAACAAGCCCGAAGAGAGAGAGAAGAGCTAGATAGAATGCTAGAAGAGAATAGGAGAAGGGTAGAAGAAGCTCAACGAAGAGAAGCTCTGGAGCTGCAGCGGAAGGAAGAAGAACGATATCGTGAGCTGGAGCTGATTCAGAGACAAAAAGAGGAGGCCGCACGGAGGAAAAAGCTGGAACAGGGAGAAGAGAGAACGTAG 2592 45.06 MIHSSLLAAFAASEAMPLSKGGTPMFSMLYRWNPLRLIIQGLLLFSLLRSNHASTDPDVEGEALVDLLGALNDSNHQITDWNYHLVSPCFSWSHITCRNGNVISLSLGSVGFSGSLSPSITKLKYLASLDLQNNNIAGVIPDYLANMTHLQNLNLANNNFNGPIPAAWDRLVGLKHLDLSDNNLTGEVPAQFFSIPMFNFSGTGLNCGFRLDKPCVSTSPHRASAKNSKFGVVASTASCGGFILLSIGAFFAYRCFYVHKLKDPMFVDVAGEDECKLCFGQIRRFSLREIQLATDNFNEANIIGQGGFGKVYKGILSDASKVAVKRLTDYNSPGGEAAFLREVQLISVAVHRNLLRLIGFCTTTSERILVYPFMQNLSVAHRLRDLKPGERSLDWATRKRIAFGAAHGLEYLHEHCNPKIIHRDLKAANILLDDDFEAVLGDFGLAKLVDTKVTHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDFSRLEEEEDVLLLDHIKKLQRENRLEDVVDKNLRSYDEKEVENIVQVALLCTQSSPEDRPTMAEVVNLLHGEGLADRWAEWMQLEEGCWEHGNGNLGLSSSVTVVCLSKNGADGHLIGSFFFSSLDPVATAEFNLMLWGEVFQGLRRTLTAPLPIAIVGEAEGTELLLPITPIPIPGEGAVPPPFAAVEVLPLPTVVVEVALPLHGDAADAEVDKLKKEEEEKKRREEESKKLEEDAARRLEELIQKNVQEILNSEETRLEIQRRIEEGRKKLFDDVDLQLAKEKEAALTAARQKEEQARREREELDRMLEENRRRVEEAQRREALELQRKEEERYRELELIQRQKEEAARRKKLEQGEERT 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1272043 1282253 - CaPI482276_02g000100.1 Cam02g0010 119752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0010 863 Pfam Leucine rich repeat 126 184 IPR001611 GO:0005515(InterPro)
Cam02g0010 863 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 47 596 - -
Cam02g0010 863 FunFam Somatic embryogenesis receptor kinase 1 266 373 - -
Cam02g0010 863 FunFam Leucine-rich repeat receptor-like kinase 59 172 - -
Cam02g0010 863 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam02g0010 863 Gene3D Phosphorylase Kinase; domain 1 266 373 - -
Cam02g0010 863 Coils Coil 780 860 - -
Cam02g0010 863 Coils Coil 707 759 - -
Cam02g0010 863 MobiDBLite consensus disorder prediction 714 736 - -
Cam02g0010 863 Pfam Arginine and glutamate-rich 1 727 862 IPR033371 -
Cam02g0010 863 Pfam Protein tyrosine and serine/threonine kinase 301 569 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam02g0010 863 SMART serkin_6 297 570 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g0010 863 SUPERFAMILY L domain-like 61 196 - -
Cam02g0010 863 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524(InterPro)
Cam02g0010 863 SUPERFAMILY Protein kinase-like (PK-like) 278 570 IPR011009 -
Cam02g0010 863 FunFam Somatic embryogenesis receptor-like kinase 1 374 589 - -
Cam02g0010 863 ProSiteProfiles Protein kinase domain profile. 297 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g0010 863 Pfam Leucine rich repeat N-terminal domain 60 97 IPR013210 -
Cam02g0010 863 Gene3D Ribonuclease Inhibitor 57 217 IPR032675 -
Cam02g0010 863 MobiDBLite consensus disorder prediction 791 824 - -
Cam02g0010 863 Gene3D Transferase(Phosphotransferase) domain 1 374 588 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0010 Cam-Chr2:1272043 Cam07g1743 Cam-Chr7:32138635 3.50E-159 dispersed
Cam02g0010 Cam-Chr2:1272043 Cam07g1742 Cam-Chr7:32128257 1.00E-166 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84935 PF00069 Pkinase 8.60E-45 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0010 - - - 0.0