Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0026 ATGGGGAAAGGACCGTTTTCTTTCCGCCGGAGCAGTAGTCGCCGCCGCCCTAAGAAGGCGTTTCATTCGTCACCGTCCTCGTCGCCACAGCCACCTCCGCAGATTAGCACCAGTTCTCCTCCCATTAACAATAATGGGAATGGCTTGGTTGGTGGTGGGGGTGGTGGGGTTGTGGGAAAAGTGAAGAAGAAGGCCGGAGGACCTAGGCTGTGGATGCGTCTCGACAGGTGGGGGCAATCGGAGCTTTTAGAGTGGGACAAGAATGCTATAATCCGACGTGCTGCAATTCCGGCTAGGGATTTGAGGATTCTTGGTCCTGTTTTCTCACACTCATCTAGCATACTCGCCAGGGAAAAGGCCATGGTTGTTAATTTAGAGTTCATAAAAGCTATAGTTACTGCTGAAGAAGTCCTATTACTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTAGATCAGCTAAGGAAGCTACTTGCTAAGACGGGTTCATCTCAACTTGAAAATGATGGGAATGTTTCGAGAGGAGGAAAGTGGTTGCCAGTTTCAGAAGCTGCTGAAGGTGAGCAGTATGAGCTCCCGTTTGAGTTTCAGGTTCTGGAAAATGCTTTGGAGGTTGTGTGCATGTACTTGGATTCCAGTGTGGCAGACCTTGAGAGAGACGCTTATCCAGTTCTGGATGAACTGGCTAGGAATGTCAGCACCAAGAATCTAGAACGTGTGAGGAGTTTGAAAAGTAATCTTACCCGTATTCTTGCACGCGTTCAGAAGGTGCGGGATGAGATAGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTTGATACTTTGCCGGGAGGTGTGGCTTCCAACAGCACGACTACTATCGTTCCTCATCTTCGTCGACTTAGTTCCACCAGGAGTGGCAGTGTGGTGACCAGCAACCTTTTGGATGATAATGACGTAGAGGACTTGGAGATGTTGCTCGAGGCATACTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGATGACACCGAGGATTATGTTAATATTCAACTTGACAACCAAAGAAATGAACTCATTCAGTTTCAGTTAACCCTGACAATTGCTTCATTTGCCATAGCTGTTGAAACCTTAATCGCCGGATTGTTTGGTATGAACATCCCTTGTACATTGTACGAGACGGACGGGGTGTTCGGGTACTTTGTCGGAGGTTCTTCAGCAGGATGTTTGTTGCTTTTCCTGCTTATTTTTGGGTATGCAAAATGGAAGAAGCTTCTTGGTTCATGA 1329 46.28 MGKGPFSFRRSSSRRRPKKAFHSSPSSSPQPPPQISTSSPPINNNGNGLVGGGGGGVVGKVKKKAGGPRLWMRLDRWGQSELLEWDKNAIIRRAAIPARDLRILGPVFSHSSSILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLAKTGSSQLENDGNVSRGGKWLPVSEAAEGEQYELPFEFQVLENALEVVCMYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDTLPGGVASNSTTTIVPHLRRLSSTRSGSVVTSNLLDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCTLYETDGVFGYFVGGSSAGCLLLFLLIFGYAKWKKLLGS 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1404830 1409818 - CaPI482276_02g000260.1 Cam02g0026 119768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0026 442 Gene3D Magnesium transport protein CorA, transmembrane region 145 373 - -
Cam02g0026 442 Gene3D - 60 142 - -
Cam02g0026 442 MobiDBLite consensus disorder prediction 1 58 - -
Cam02g0026 442 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 378 429 IPR045863 -
Cam02g0026 442 FunFam Magnesium transporter MRS2-1 59 142 - -
Cam02g0026 442 Pfam Magnesium transporter MRS2-like 84 286 - -
Cam02g0026 442 Gene3D Magnesium transport protein CorA, transmembrane region 380 440 - -
Cam02g0026 442 Pfam CorA-like Mg2+ transporter protein 332 433 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Cam02g0026 442 CDD Mrs2_Mfm1p-like 71 439 IPR039204 -
Cam02g0026 442 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 58 439 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cam02g0026 442 Coils Coil 240 274 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0026 K16075 - - csv:101203496 732.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0026 Cam-Chr2:1404830 Cam05g1114 Cam-Chr5:10262101 4.40E-214 dispersed
Cam02g0026 Cam-Chr2:1404830 Cam07g0060 Cam-Chr7:1741241 1.10E-84 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g1277 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla02g00024 Cam02g0026 Cec02g0026 Cco02g0023 Clacu02g0026 Cmu02g0026 Cre02g0369 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam10g1389 . 1 447 MRS2 Gene Family AT1G16010 85.2 4.0e-207 717.6
Cam08g1494 . 6 380 MRS2 Gene Family AT1G16010 52.4 3.6e-107 385.6
Cam06g0667 . 1 365 MRS2 Gene Family AT5G64560 81.0 1.3e-158 556.2
Cam07g0060 . 715 1086 MRS2 Gene Family AT5G64560 68.9 1.4e-131 466.5
Cam02g0728 . 14 495 MRS2 Gene Family AT3G19640 64.4 2.3e-155 545.8
Cam05g1114 . 59 442 MRS2 Gene Family AT3G58970 70.6 3.4e-142 501.9
Cam02g0026 . 59 442 MRS2 Gene Family AT3G58970 69.7 3.2e-140 495.4
Cam08g1494 . 6 380 MRS2 Gene Family AT2G03620 68.1 2.1e-136 482.6
Cam10g1389 . 13 447 MRS2 Gene Family AT2G03620 53.0 1.2e-112 403.7
Cam05g1114 . 59 441 MRS2 Gene Family AT4G28580 50.1 2.3e-92 336.3
Cam06g0667 . 1 327 MRS2 Gene Family AT5G09690 76.1 3.9e-127 451.4
Cam07g0060 . 715 1048 MRS2 Gene Family AT5G09690 63.9 1.8e-108 389.4
Cam10g1389 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.7e-78 288.1
Cam06g0667 . 23 287 MRS2 Gene Family AT5G09720 68.3 1.7e-89 326.2
Cam07g0060 . 750 1008 MRS2 Gene Family AT5G09720 61.7 4.9e-76 281.6
Cam10g1389 . 1 447 MRS2 Gene Family AT1G80900 83.2 7.3e-201 696.8
Cam08g1494 . 6 380 MRS2 Gene Family AT1G80900 54.2 6.8e-106 381.3
Cam01g1344 . 41 436 MRS2 Gene Family AT5G22830 71.5 3.0e-149 525.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47