Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0056 ATGGATGCAGAACCTTCGATAACCAATGGCACAGATGATACAATCGTCTGCTATGCGCCCACCATGATTACTACAAATGGGGTTTGGCAAGGAGACAACCCTCTGGATTATTCTCTTCCTCTCTTCATTTTGCAGTTAACAATGGTGGTTTTGATGACTCGCGCTTTGGTTTTCCTCTTAAAACCCTTTCGTCAACCTCGAGTCATCTCTGAAATTTTGGTGAGTTTAAGATCTGATTTTAGGTTCTTTGTTGCAGCTAACTTATTGGCATTGATGATGGCATTTGGAGCTTTAAATTTTTGTTTCTTTGTGCAACAGGGTGGGGTCATTTTGGGGCCTTCGGTACTAGGGAGAAGTGCTAAATTTGCCAACACCGTATTTCCTTTAAGAAGTGTAATGGTGCTTGAAACAATGGCCAATGTGGGGCTTCTCTACTTTCTGTTCTTGGTTGGTGTGGAGATGGATCTATCAGTGATTCGTCGAACAGGGAAGAAGGCAATGGCAATAGCTGTAGCAGGAATGATTCTTCCGTTTGGAATAGGAGCTGCCTTTTCATTCCAGTTGCACAAAGCAGATCAGAAATTGAACTACAACACTTACGTTATGTTTCTTGGTATTGCGCTCTCCGTGACAGCTTTCCCAGTGCTAGCTAGAATTCTTGCAGAGCTTAAACTGATAAATTCAGAGCTTGGAAGGATGGCCATGGCAGCTGCCCTTTTCAATGATATGTGTGCTTGGGTTCTCTTAGCTTTAGCCATAGCCTTATCAGAGAATGACTCCTCATCCTTGGCTTCTTTATGGGTTGTATTGTCAAGTGTAGGCTTTGTTTTGTTCTGCATCTTCATCGTTAGACCAACGATCTCGTGGATGATTCGAAAAACTCCAGAAGGGGAAAGTGTGAGTGAGTTCTACATTTGTTTGATTCTCACAGGGGTTATGATCTCAGGATTTGTTACAGATGCCATAGGAACACACTCCGTGTTTGGGGCTTTTGTGTTTGGCTTAGTTATCCCAAATGGATCACTTGGGGTGGCTTTAATTGAGAAACTTGAGGATTTTGTTTCAGGGCTTCTGCTCCCTCTTTTCTTTGCAATAAGTGGGCTTAAGACTAATGTGGCTAGCATAGAAGGATTAATCTCTTGGGTATCTATTCTATTTATAACTCTCCTTGCTTTTATTGGCAAAATCATTGGAACTCTTCTTGCCTCCATTTGTTATCAAATGTCCTATCGGGAAGGTGTCACATTAGGCTTGCTTATGAACACCAAGGGCCTTATTGAAATGATCATACTCAATGTCGGCAAGGACCAAAAGGTGTTAGATGATCAAACATTCACAGTTATGGTGATTGTAGCCCTCGTTATGACCGGGATAATAACACCTGTAGTTACAATAATCTATAGGCCAACAAGAAGGTTTCTACCCTATAAGAAACGAACAATCCAAGCATCAAAGCCAGATTCAGAGTTCAGAGTTTTAGTTTGTATACACACACCTCGAAATGTGCCAACTATCATCCATCTCCTTGATGCCTCCCATCCAACCAAAAGATCCCCAATTTGCATTTATGTGCTACACTTGGTCGAACTCACAGGTCGAGCCTCAGCCATGCTCATTGTCCACAACACCAGAAAATCAGGTCGTCCTGCTTTAAATCGAACCCAAGCTCAATCAGATCACATCATCAATGCATTCGAGAACTACGAACAACACGTCGATTGCGTCTCTGTTCAACCCCTCACAGCCATTTCCCCTTACTCGACAATGCACGAAGACATATGCAATTTAGCCGAGGATAAACGGGTTGCCCTCATAATCATCCCATTCCATAAGCAACAAACAGTCGATGGAGGAATGGAAGCCACAAATCCAGCATTTAGATTGGTTAACCAAAATGTGTTAGCCAATGCCCCTTGCTCCGTCGGAATTCTAGTCGATCGAGGCTTAAACGGCTCGAATCGAGTCGCTTCAAACAAGGCAACTCATTATAACATAATCACGTTGTTCTTTGGTGGACAAGATGATAGAGAAGCCTTATCATACGCATGGAGAATGTCAGAACATCCAGGAGTGAGCTTAACCGTAATGCGATTCATCGCTGCACAAGAAATAATTGAACCAAAACCAGAAGAGGACGCACCAATCGTTTCAGCAATGGAAACAGAAATTAGCAGAGAGAGGAAACTCGATGAAGACTACATAAACGAATTTAGGACAAAGAACCCAAATAGCGAGTCAATTACTTACACAGAGAGAGTGTTGAACAACGGCGAGGAGACAGTGGCGGCCATAAGATCAATGGACGATGCTCACGACCTGTTCATCGTAGGAAGAGGTGAATCTCATGTATCACCTCTCACTGCCGGACTCACAGACTGGAGCGAATGTCCAGAGCTGGGAGCAATCGGTGATTTGTTAGCTTCATCGGATTTTGCAGCGACGACTTCGGTTTTGGTAGTGCAACAGTTCGGAGCAGCAATGGCGGTAGAACATGGAGAAGAAGAAGGTTCACCACGCAACGAAGAACCCATTGATCCCTACCAAAGCCTGAGATCAATGAATTTGAGGCAACATACTCCACCAAGAACTCAAATGATTTATGATACATGA 2610 43.3 MDAEPSITNGTDDTIVCYAPTMITTNGVWQGDNPLDYSLPLFILQLTMVVLMTRALVFLLKPFRQPRVISEILVSLRSDFRFFVAANLLALMMAFGALNFCFFVQQGGVILGPSVLGRSAKFANTVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGKKAMAIAVAGMILPFGIGAAFSFQLHKADQKLNYNTYVMFLGIALSVTAFPVLARILAELKLINSELGRMAMAAALFNDMCAWVLLALAIALSENDSSSLASLWVVLSSVGFVLFCIFIVRPTISWMIRKTPEGESVSEFYICLILTGVMISGFVTDAIGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNVASIEGLISWVSILFITLLAFIGKIIGTLLASICYQMSYREGVTLGLLMNTKGLIEMIILNVGKDQKVLDDQTFTVMVIVALVMTGIITPVVTIIYRPTRRFLPYKKRTIQASKPDSEFRVLVCIHTPRNVPTIIHLLDASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHVDCVSVQPLTAISPYSTMHEDICNLAEDKRVALIIIPFHKQQTVDGGMEATNPAFRLVNQNVLANAPCSVGILVDRGLNGSNRVASNKATHYNIITLFFGGQDDREALSYAWRMSEHPGVSLTVMRFIAAQEIIEPKPEEDAPIVSAMETEISRERKLDEDYINEFRTKNPNSESITYTERVLNNGEETVAAIRSMDDAHDLFIVGRGESHVSPLTAGLTDWSECPELGAIGDLLASSDFAATTSVLVVQQFGAAMAVEHGEEEGSPRNEEPIDPYQSLRSMNLRQHTPPRTQMIYDT 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1682630 1685392 + CaPI482276_02g000560.1 Cam02g0056 119798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0056 869 MobiDBLite consensus disorder prediction 850 869 - -
Cam02g0056 869 MobiDBLite consensus disorder prediction 829 869 - -
Cam02g0056 869 Gene3D - 41 472 IPR038770 -
Cam02g0056 869 Gene3D - 511 791 - -
Cam02g0056 869 Pfam Sodium/hydrogen exchanger family 108 464 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cam02g0056 869 PANTHER CATION/H + ANTIPORTER 17 823 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0056 K26731 - - csv:101219265 1499.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0056 Cam-Chr2:1682630 Cam07g0779 Cam-Chr7:19163351 6.80E-203 dispersed
Cam02g0056 Cam-Chr2:1682630 Cam07g0484 Cam-Chr7:6803706 9.70E-133 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam02g0056 . 4 855 Antiporter Super Family AT2G13620 67.9 0.0e+00 1135.9
Cam04g0889 . 80 850 Antiporter Super Family AT3G53720 69.1 6.5e-290 993.4
Cam07g0779 . 1 779 Antiporter Super Family AT5G41610 70.3 7.1e-311 1063.1
Cam07g0776 . 7 774 Antiporter Super Family AT5G41610 68.0 8.1e-299 1023.1
Cam07g0769 . 37 821 Antiporter Super Family AT5G41610 66.6 2.1e-294 1008.4
Cam07g0766 . 1 780 Antiporter Super Family AT5G41610 64.9 2.4e-287 984.9
Cam04g0889 . 12 824 Antiporter Super Family AT5G41610 51.0 2.0e-209 726.1
Cam07g0776 . 11 791 Antiporter Super Family AT4G23700 65.2 5.3e-290 993.8
Cam07g0769 . 46 838 Antiporter Super Family AT4G23700 64.0 1.3e-283 972.6
Cam07g0766 . 11 778 Antiporter Super Family AT4G23700 63.4 3.8e-280 961.1
Cam07g0779 . 9 779 Antiporter Super Family AT4G23700 63.8 3.8e-280 961.1
Cam07g0779 . 5 779 Antiporter Super Family AT3G17630 64.0 9.8e-273 936.4
Cam07g0776 . 7 791 Antiporter Super Family AT3G17630 61.4 4.3e-268 921.0
Cam07g0769 . 45 819 Antiporter Super Family AT3G17630 62.1 8.1e-267 916.8
Cam07g0766 . 7 778 Antiporter Super Family AT3G17630 61.2 7.8e-262 900.2
Cam04g0889 . 12 826 Antiporter Super Family AT3G17630 51.6 9.4e-207 717.2
Cam07g0776 . 1 775 Antiporter Super Family AT1G64170 57.8 8.5e-240 827.0
Cam07g0769 . 47 821 Antiporter Super Family AT1G64170 57.6 1.2e-238 823.2
Cam07g0779 . 15 782 Antiporter Super Family AT1G64170 57.1 7.7e-233 803.9
Cam07g0766 . 15 780 Antiporter Super Family AT1G64170 56.9 5.5e-231 797.7
Cam02g0056 . 4 855 Antiporter Super Family AT2G13620 67.9 0.0e+00 1135.9
Cam07g0776 . 1 775 Antiporter Super Family AT1G64170 57.8 8.5e-240 827.0
Cam07g0769 . 47 821 Antiporter Super Family AT1G64170 57.6 1.2e-238 823.2
Cam07g0779 . 15 782 Antiporter Super Family AT1G64170 57.1 7.7e-233 803.9
Cam07g0766 . 15 780 Antiporter Super Family AT1G64170 56.9 5.5e-231 797.7
Cam07g0776 . 11 791 Antiporter Super Family AT4G23700 65.2 5.3e-290 993.8
Cam07g0769 . 46 838 Antiporter Super Family AT4G23700 64.0 1.3e-283 972.6
Cam07g0766 . 11 778 Antiporter Super Family AT4G23700 63.4 3.8e-280 961.1
Cam07g0779 . 9 779 Antiporter Super Family AT4G23700 63.8 3.8e-280 961.1
Cam07g0779 . 1 779 Antiporter Super Family AT5G41610 70.3 7.1e-311 1063.1
Cam07g0776 . 7 774 Antiporter Super Family AT5G41610 68.0 8.1e-299 1023.1
Cam07g0769 . 37 821 Antiporter Super Family AT5G41610 66.6 2.1e-294 1008.4
Cam07g0766 . 1 780 Antiporter Super Family AT5G41610 64.9 2.4e-287 984.9
Cam04g0889 . 12 824 Antiporter Super Family AT5G41610 51.0 2.0e-209 726.1
Cam07g0779 . 5 779 Antiporter Super Family AT3G17630 64.0 9.8e-273 936.4
Cam07g0776 . 7 791 Antiporter Super Family AT3G17630 61.4 4.3e-268 921.0
Cam07g0769 . 45 819 Antiporter Super Family AT3G17630 62.1 8.1e-267 916.8
Cam07g0766 . 7 778 Antiporter Super Family AT3G17630 61.2 7.8e-262 900.2
Cam04g0889 . 12 826 Antiporter Super Family AT3G17630 51.6 9.4e-207 717.2
Cam04g0889 . 80 850 Antiporter Super Family AT3G53720 69.1 6.5e-290 993.4
Cam09g0397 . 47 790 Antiporter Super Family AT3G52080 54.3 1.2e-233 806.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005878 2 1 2 1 2 1 2 1 0 1 1 0 2 1 1 2 0 3 2 2 1 1 1 1 1 1 1 2 1 2 39