Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0073 ATGGTGAAGGCTGGATTTGCCGGTGATGATGCTCCCAGAGCTGTGTTTCCCAGTATTGTTGGTCGACCTCGACACACTGGTGTCATGGTGGGTATGGGCCAGAAAGATGCTTACGTTGGTGACGAGGCCCAATCCAAAAGAGGTATTCTTACCTTGAAATATCCCATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCACCTGAAGAACACCCAGTGCTTCTTACCGAAGCTCCTCTCAATCCTAAAGCCAACAGAGAAAAGATGACACAAATCATGTTTGAAACTTTCAATGTACCTGCCATGTATGTTGCCATCCAGGCCGTTCTATCTCTGTATGCCAGTGGTCGTACAACAGGTATTGTGCTCGACTCTGGTGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGTTATGCTCTACCCCATGCTATCCTCCGTCTGGACCTTGCTGGTCGTGATCTAACTGATGCTTTGATGAAGATTCTCACTGAGAGAGGGTACATGTTCACAACCACTGCCGAACGGGAAATTGTCCGTGACATGAAAGAGAAGCTTGCTTATGTTGCACTCGACTATGAGCAGGAACTGGAGACTGCTAAGAGTAGCTCCTCAATTGAGAAGAACTATGAACTGCCCGATGGACAAGTCATCACAATTGGAGCTGAGAGATTCCGTTGCCCCGAAGTTCTTTTCCAGCCATCCCTCATCGGAATGGAAGCTGCTGGAATCCACGAGACTACCTACAACTCAATTATGAAGTGTGATGTTGATATCAGAAAAGATTTGTATGGAAACATTGTTCTCAGTGGTGGTTCTACCATGTTCCCTGGTATCGCTGACCGTATGAGCAAAGAGATCACAGCTCTTGCTCCCAGCAGCATGAAAATCAAGGTCGTTGCACCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGATCAATCCTTGCATCGCTCAGCACCTTCCAGCAGATGTGGATTTCAAAGGGCGAGTACGACGAATCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAA 1083 47.0 MVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1837829 1839219 + CaPI482276_02g000730.1 Cam02g0073 119815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0073 360 PANTHER ACTIN 4 352 IPR004000 -
Cam02g0073 360 Gene3D Actin; Chain A, domain 4 165 256 - -
Cam02g0073 360 SMART actin_3 1 360 IPR004000 -
Cam02g0073 360 FunFam Actin, alpha skeletal muscle 1 169 - -
Cam02g0073 360 FunFam Major actin 243 323 - -
Cam02g0073 360 ProSitePatterns Actins signature 2. 341 349 IPR004001 -
Cam02g0073 360 Pfam Actin 1 360 IPR004000 -
Cam02g0073 360 ProSitePatterns Actins and actin-related proteins signature. 89 101 IPR020902 -
Cam02g0073 360 FunFam Actin, muscle 165 256 - -
Cam02g0073 360 Gene3D - 1 354 - -
Cam02g0073 360 CDD NBD_sugar-kinase_HSP70_actin 59 166 - -
Cam02g0073 360 ProSitePatterns Actins signature 1. 38 48 IPR004001 -
Cam02g0073 360 Gene3D - 123 323 - -
Cam02g0073 360 SUPERFAMILY Actin-like ATPase domain 131 360 IPR043129 -
Cam02g0073 360 PRINTS Actin signature 34 45 IPR004000 -
Cam02g0073 360 PRINTS Actin signature 100 113 IPR004000 -
Cam02g0073 360 PRINTS Actin signature 221 237 IPR004000 -
Cam02g0073 360 PRINTS Actin signature 11 20 IPR004000 -
Cam02g0073 360 PRINTS Actin signature 125 144 IPR004000 -
Cam02g0073 360 PRINTS Actin signature 46 68 IPR004000 -
Cam02g0073 360 FunFam Putative actin-related protein 5 324 352 - -
Cam02g0073 360 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0073 Cam-Chr2:1837829 Cam04g0905 Cam-Chr4:23173196 6.70E-205 dispersed
Cam01g1603 Cam-Chr1:29591689 Cam02g0073 Cam-Chr2:1837829 1.30E-194 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0073 K10355 - csv:101215469 722.62