Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0075 ATGCTGGAAATTTCGCCTTCGCCGGAAAACTCTACCGCCGTCGCCGCTGCCGTCGTGAACCGGGCCGCCGAGGAAGACGGTGCAGCAGCCTCTGCCGGATTTTCGGAGGACGCTGACCGGAACTGGCCCGGTAATCGGTGGCCGCGAGAGGAGACTATGGCTTTGCTGAAGGTTCGGTCGAGTATGGATACTGCGTTTAGGGATGCAAGTTTGAAAGCTCCTCTATGGGAAGAAGTTTCCAGGAAATTGGCTGAGCTTGGGTATAATCGAAATGCGAAAAAATGCAAAGAGAAGTTTGAGAACATTTATAAGTATCACAAAAGGACTAAAGATGGAAGATCAGGGAAAGCGAATGGGAAAAATTATAGGTATTTTGAGCAATTAGAAGCTCTAGATAATAATCCATTGCTTCCCTCTCAAGCTGATTCAATGGAAGAAATCCCAAGGATTATCCCAAACAATGTTGTGCACAATGCAATTCCATGTTCCGTAGTAAACCCGGGTGCAAATTTTGTTGAAACTACCACCACTTCAATATCGACGTCGACCACATCTTGTTCGAGTAAAGAATCAGGTGGGACGAGGAAGAAGAAGAGGAAGTTTGTGGAGTTCTTTGAGAGGTTAATGAACGAGGTGATTGAGAAGCAGGAGAAATTGCAAAAGAAGTTTGTGGAGGCATTGGAGAAATGTGAAGTAGAGAGGTTAGCTAGAGAAGAAGAATGGAAGATGCAAGAATTAGCTCGAATCAAGAAAGAGCGAGAACGTTTAAATCAAGAGAGATCGATTGCAGCTGCAAAGGATGCAGCTGTTCTTTCATTCTTGAAGGTTTTCTCTGAACAAGTGGGCACAGTGCAGTTCCCTGAGAACTTAGTGCAGTTCCCGGAGAACTTGATTTCAGTGGAGAATTTGACTGAGAAGCAAGATGATGGTAATGTTGACAGAAATACAAGCACTCAAGAGAATATCAACAATGGTAATTCGAATCAGATTAGCTCGTCCCGATGGCCGAAAGAAGAGATCGATGCTCTGATTCAGCTAAGGACTAATCTGCAGATGAAGTACCAAGATAATGGCCCTAAAGGTCCTCTCTGGGAGGAAATATCATTAGCCATGAAGAAACTTGGGTATGATAGAAGTGCAAAGAGGTGTAAAGAGAAATGGGAAAACATCAACAAATACTTCAAAAGAGTAAAGGAAAGCAACAAAAAGCGACCTGAGGATTCAAAGACATGTCCTTATTTCCAGCAGCTTGATGCATTGTACAAACAGAAATCCAAGAAAGTTGTCAACAATCCAGCTAATCCAAATTACGAACTAAAACCCGAGGAACTATTGATGCACATGATGGGCGGCCAAGAAGAAAGCCACCAACCTGAATCAGCAACAGATGACGGTGAAGCTGAGAATGCCGATCAGAACCAAGAAGACGAAGATGAAGACGAAGATTATCAGATTGTGGCCAACAACAACAGTAATCAAATGGAAGTTAACTAG 1494 43.51 MLEISPSPENSTAVAAAVVNRAAEEDGAAASAGFSEDADRNWPGNRWPREETMALLKVRSSMDTAFRDASLKAPLWEEVSRKLAELGYNRNAKKCKEKFENIYKYHKRTKDGRSGKANGKNYRYFEQLEALDNNPLLPSQADSMEEIPRIIPNNVVHNAIPCSVVNPGANFVETTTTSISTSTTSCSSKESGGTRKKKRKFVEFFERLMNEVIEKQEKLQKKFVEALEKCEVERLAREEEWKMQELARIKKERERLNQERSIAAAKDAAVLSFLKVFSEQVGTVQFPENLVQFPENLISVENLTEKQDDGNVDRNTSTQENINNGNSNQISSSRWPKEEIDALIQLRTNLQMKYQDNGPKGPLWEEISLAMKKLGYDRSAKRCKEKWENINKYFKRVKESNKKRPEDSKTCPYFQQLDALYKQKSKKVVNNPANPNYELKPEELLMHMMGGQEESHQPESATDDGEAENADQNQEDEDEDEDYQIVANNNSNQMEVN 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1854573 1856329 + CaPI482276_02g000750.1 Cam02g0075 119817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0075 497 Coils Coil 202 229 - -
Cam02g0075 497 CDD GT1 333 398 - -
Cam02g0075 497 Gene3D - 47 108 - -
Cam02g0075 497 Gene3D - 335 396 - -
Cam02g0075 497 FunFam Trihelix transcription factor GT-2 47 108 - -
Cam02g0075 497 Pfam Myb/SANT-like DNA-binding domain 45 131 IPR044822 -
Cam02g0075 497 Pfam Myb/SANT-like DNA-binding domain 333 420 IPR044822 -
Cam02g0075 497 ProSiteProfiles Myb-like domain profile. 45 103 IPR001005 -
Cam02g0075 497 PANTHER FI21293P1 38 471 - -
Cam02g0075 497 ProSiteProfiles Myb-like domain profile. 327 391 IPR001005 -
Cam02g0075 497 SMART sant 43 105 IPR001005 -
Cam02g0075 497 SMART sant 331 393 IPR001005 -
Cam02g0075 497 MobiDBLite consensus disorder prediction 448 497 - -
Cam02g0075 497 MobiDBLite consensus disorder prediction 304 333 - -
Cam02g0075 497 MobiDBLite consensus disorder prediction 314 333 - -
Cam02g0075 497 MobiDBLite consensus disorder prediction 464 484 - -
Cam02g0075 497 Coils Coil 239 266 - -
Cam02g0075 497 CDD GT1 45 110 - -
Cam02g0075 497 FunFam Trihelix transcription factor GT-2 335 396 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0075 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0075 Cam-Chr2:1854573 Cam08g0789 Cam-Chr8:9368873 6.90E-91 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1234 Blo04g00970 . . . Bpe15g00395 . . . Cmo02g00617 Cmo20g01084 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01036 . Sed01g3751 . . . Cma20g01075 . . Cpe05g01074 . Bhi10g02341 Tan07g0890 Cmetu09g0584 . Hepe08g1260 . . Cla02g00074 Cam02g0075 Cec02g0077 Cco02g0069 Clacu02g0073 Cmu02g0072 Cre02g0412 Lsi10g00706 . . Cme11g00078
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008720 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51407 PF13837 Myb_DNA-bind_4 3.90E-22 CL0123 Cam TF