Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0107 ATGGAAGTTTCTGCTACAAAAAGAAGGCTCCTCAAAGTCATCTTCCTCGGTGACAGTGGAGTCGGGAAGACCTCTTTGATGAATCGATATGTGTATAAGAAGTTTAATCTACAGTATAAAGCAACGATTGGTGCTGACTTTATGACAAAGGAGCTAAAGATTGACGACCAACTTGTCACATTGCAAGTTTGGGACACCGCAGGGCAGGAAAGGTTTCAGAGTCTAGGGGCTGCATTTTACAGAGGAGCAGATTGCTGTGTTTTTGTCTATGATGTGAATGTGGCCAAATCATTTGAATCACTTAGCAGTTGGCATGAGGAGTTTCTCAAGCAGGCAGCACCAGCTGATCCGAAAGCATTCCCCTTCCTATTACTCGGGAACAAGATCGATGTAGACAACGGACGTAGCCGAGCCATCTCAGAGAAAAGGGCAAGACAATGGTGTGATTCCAGGGGAAACATGCCATACTTTGAGACCTCAGCAAAAGAGGATTATAATGTCAATGAAGCATTTCTTTGCATTGCAAAAGCTGCATTAACCAATGAAGAAGAGCAGGACAATTACTTTGAAAGTATTTCTGAGTCTGTTTCCGAAGTGGAGACAAGAGGAGGAGGAGGCTGTGCTTGTTAA 630 43.81 MEVSATKRRLLKVIFLGDSGVGKTSLMNRYVYKKFNLQYKATIGADFMTKELKIDDQLVTLQVWDTAGQERFQSLGAAFYRGADCCVFVYDVNVAKSFESLSSWHEEFLKQAAPADPKAFPFLLLGNKIDVDNGRSRAISEKRARQWCDSRGNMPYFETSAKEDYNVNEAFLCIAKAALTNEEEQDNYFESISESVSEVETRGGGGCAC 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2236540 2238635 - CaPI482276_02g001070.1 Cam02g0107 119849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0107 209 ProSiteProfiles small GTPase Ras family profile. 6 209 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam02g0107 209 SMART ran_sub_2 16 202 - -
Cam02g0107 209 Gene3D - 4 194 IPR027417 -
Cam02g0107 209 FunFam Ras-related protein Rab7 3 191 - -
Cam02g0107 209 NCBIfam small GTP-binding protein domain 11 171 IPR005225 GO:0005525(InterPro)
Cam02g0107 209 ProSiteProfiles small GTPase Rho family profile. 4 181 - -
Cam02g0107 209 SMART rab_sub_5 11 181 - -
Cam02g0107 209 SMART ras_sub_4 8 181 - -
Cam02g0107 209 CDD Rab7 11 184 - -
Cam02g0107 209 PANTHER RAB FAMILY 6 194 - GO:0005774(PANTHER)
Cam02g0107 209 SMART rho_sub_3 13 181 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam02g0107 209 PRINTS Transforming protein P21 ras signature 11 32 - -
Cam02g0107 209 PRINTS Transforming protein P21 ras signature 34 50 - -
Cam02g0107 209 PRINTS Transforming protein P21 ras signature 118 131 - -
Cam02g0107 209 PRINTS Transforming protein P21 ras signature 52 74 - -
Cam02g0107 209 PRINTS Transforming protein P21 ras signature 156 178 - -
Cam02g0107 209 Pfam Ras family 12 178 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam02g0107 209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 187 IPR027417 -
Cam02g0107 209 ProSiteProfiles small GTPase Rab1 family profile. 4 209 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0107 K07897 - - csv:101212418 396.741
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0107 Cam-Chr2:2236540 Cam09g0199 Cam-Chr9:2703777 1.50E-76 dispersed
Cam02g0107 Cam-Chr2:2236540 Cam11g1798 Cam-Chr11:30512776 3.70E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1130 . . . . . . . . . . Cma03g00677 . Car03g00625 . Sed10g1012 . . Bhi03g00847 Tan03g2093 Cmetu04g2856 . Hepe04g1602 . . Cla01g01988 Cam01g2086 Cec04g1743 Cco04g1808 . Cmu01g1980 Cre04g1657 . . . . . . . Cme08g00942 . . . . . Bpe06g00334 . . . . . . . . . . . Bhi10g02362 . . . . . . Cla02g00101 Cam02g0107 Cec02g0108 Cco02g0100 Clacu02g0104 Cmu02g0098 Cre02g0439 . Csa06g03340 . Cme11g00109
Vvi7g1168 . Blo16g00503 . . . . . . . . . Cma20g01106 . Car20g00951 . . Cpe16g00052 . . . . . . . . . . . . . . . . Cone8ag0070 . . . . . . . Bda11g01339 . . . . Bma06g00545 Sed05g3820 . Cmo20g01136 . . . . . . Bhi10g02307 Tan07g0957 . . Hepe10g0784 . . Cla02g00101 Cam02g0107 Cec02g0108 Cco02g0100 Clacu02g0104 Cmu02g0098 Cre02g0439 Lsi10g00673 Csa02g01557 . Cme11g00207
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002492 2 2 2 2 2 1 3 1 1 1 1 1 2 2 2 2 1 2 2 1 2 2 2 2 2 2 2 5 4 1 57