Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0136 ATGGGTTGGAAGAGATCTTCGAGGAACGGCAATTTGAGGATCTGGGTGCAGGTTTTAGTCGGATTCGTGATCTGCGCAGCCCAAGTTCTTTTCGGAATTACGAATCCAGGGGATTTTTCTGCTATTAGTAGCTTACATACCGCACTGGGACTCCCCAGTCTTCCTGGATGGGGCATCGGGCAAGACCCATGCGGAGACGCATGGCAGGGTGTTGTGTGTAATGATTCGAGCATCATTAAAATAATCATTAATGCTGCTAATTTGGGAGGTGAACTTGGTGACAACTTGGGATTGTTTTCTTCGATTCAAACAATTGATTTAAGCAACAATCATATAGGGGGAAGTATACCATCCAGTTTACCTGTTACCATGCAGAACTTTTTTCTTTCAGCTAATGAGTTCACGGGAAGTATTCCGAGTTCATTATCATCTTTGATTCAACTGACAGCGATGTCGTTGAATGATAACAAATTAAGTGGACAAATACCAGATTCCTTTGAAGCCATTTCTCAATTGGTCAATTTAGACTTGTCCAATAACAACTTGAGTGGGCCACTGCCTCCATCTGTAAGCAATTTATTGGCATTGACCACCCTGCATTTGCAGAACAATCAGCTGTCGGGGACCCTTGATGTTCTACAAGACCTTCCACTGAAAGACTTGAATATAGAGAACAACCTTTTTTCTGGACCCATACCTGAGAAGGTGCTGAGTATCCCTAATTTTAGAAAGGATGGAAATCCATTTAATTCTTCTGTTTCTCCGACATCTCCTCCTGTATCTCCTTCTCCACCATCAAAGCCAGCACCAGCACCGCCAGTTTCTGGGGCACCACCAGTTTCTGGAGCACCACCATCTTCTCAACAAAAACCTAAGAAACAGGCTGATGGACCATCGGCACCAGAGGAATCCAGTTCTGGAAAAAATAAGAAAAGCACTAAAAGGGTTGTTTTAATAACAATTGCAGTGGTTTTGTCATTCATAATTTTGGTCTTGGCATGTGTGCTCTTTATGCCAAGGTGCAGAAGAAGAAGAGTTGATAGTGTTTCCAAGCGACATCAGATAGGTGCTTATAGAGGTGAGAGAGAGAATGCTGGAAATCAGGGAGCCATGCCCCATACAAATGATCAGATTCCTAAAGTTCCAAAAGAGCCAGTTGTAAGGCCGAAGCAGGAAACTCAAACAGAGGTTCAGCAGAAGGTTCCAAAAGATCATGAAGAGAGAAAGAAAAACATGCCAAGAATGAGCGCTATTCCAAAGAAGGATCATCATGAAGTAGATATGAGCGCACTCGATGTTTATCTAATGCCTCCCCCTCCCCCACCACCTCCCCCTCCTCCTCCCCCTCCCCCTCCCCCTCCTGTTGAAGAGGTCACTGCCGTGCCCATTGTTCCAGCCGAAGTTCCTCCCTTGAAGCCTCTCACTAAACATAGAATTACCTCAACTTTTGCAAAATCTTTTACCATTGCGTCCCTTCAGCAATATACAAACAGCTTTTCACAAGAGAATCTTCTAGGAGAAGGAATGCTGGGGAGTGTTTATAGGGCACAGCTTCCCAGTGGGAAGTTACTGGCCGTCAAGAAACTGGATAAGAGAGCATTCAGTCAGCAAAAGGATGATGAATTTCTTGAGTTAGTGAATAATATCGATAGAATCCGGCATGCTAATGTGGTCGAGCTCAGTGGTTACTGTGCAGAGCATGGTGAAAGGCTTCTTATCTATGAGTATTGTAGTGGTGGAACATTGCAGGATGCACTGCACTCAGATGAAGAGTTCAGAAAGAAACTTTCGTGGAATGCCCGCATTAGAATGGCTCTTGGGGCTGCAAGAGCCTTGGAGTATCTGCATGAGGTCTGTCAGCCTCCTGTTATTCATAGGAATTTCAAGTCTGCGAATGTCCTACTTGATGATGATCTTTCAGTGCGTGTTTCAGATTGTGGGCTGGCTCCATTAATATCAAAAGGAGCTGTTAGTCAGCTATCTGGTCAGCTTCTGACAGCATATGGTTACGGAGCGCCAGAATTTGAATCAGGAGTTTATACACTTGAGAGTGACGTTTACAGCTTCGGTGTGGTTATGCTGGAACTTCTAACTGGCCGGATGTCTTATGACAGAACAAGGACCCGAGGTGAGCAGTTCCTAGTCAGGTGGGCGATTCCACAGCTTCACGACATAGAGGCATTGACAAGCATGGTTGATCCTTCACTCAATGGTCAATACCCTGCCAAATCCTTATCGTACTTTGCCGATATCATATCAAAATGTGTTCAGTCGGAGCCTGAATTCCGGCCACCAATGTCGTCGGTTGTTCAGGACTTGCTCAACATGATAAGGAGAGAACCACTTGGCAGTGGTTCAAGTGAAGATTGA 2370 44.85 MGWKRSSRNGNLRIWVQVLVGFVICAAQVLFGITNPGDFSAISSLHTALGLPSLPGWGIGQDPCGDAWQGVVCNDSSIIKIIINAANLGGELGDNLGLFSSIQTIDLSNNHIGGSIPSSLPVTMQNFFLSANEFTGSIPSSLSSLIQLTAMSLNDNKLSGQIPDSFEAISQLVNLDLSNNNLSGPLPPSVSNLLALTTLHLQNNQLSGTLDVLQDLPLKDLNIENNLFSGPIPEKVLSIPNFRKDGNPFNSSVSPTSPPVSPSPPSKPAPAPPVSGAPPVSGAPPSSQQKPKKQADGPSAPEESSSGKNKKSTKRVVLITIAVVLSFIILVLACVLFMPRCRRRRVDSVSKRHQIGAYRGERENAGNQGAMPHTNDQIPKVPKEPVVRPKQETQTEVQQKVPKDHEERKKNMPRMSAIPKKDHHEVDMSALDVYLMPPPPPPPPPPPPPPPPPPVEEVTAVPIVPAEVPPLKPLTKHRITSTFAKSFTIASLQQYTNSFSQENLLGEGMLGSVYRAQLPSGKLLAVKKLDKRAFSQQKDDEFLELVNNIDRIRHANVVELSGYCAEHGERLLIYEYCSGGTLQDALHSDEEFRKKLSWNARIRMALGAARALEYLHEVCQPPVIHRNFKSANVLLDDDLSVRVSDCGLAPLISKGAVSQLSGQLLTAYGYGAPEFESGVYTLESDVYSFGVVMLELLTGRMSYDRTRTRGEQFLVRWAIPQLHDIEALTSMVDPSLNGQYPAKSLSYFADIISKCVQSEPEFRPPMSSVVQDLLNMIRREPLGSGSSED 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2464377 2471851 + CaPI482276_02g001360.1 Cam02g0136 119878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0136 789 ProSiteProfiles Protein kinase domain profile. 499 777 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g0136 789 MobiDBLite consensus disorder prediction 397 411 - -
Cam02g0136 789 Pfam Leucine Rich Repeat 148 167 IPR001611 GO:0005515(InterPro)
Cam02g0136 789 Pfam Leucine Rich Repeat 172 193 IPR001611 GO:0005515(InterPro)
Cam02g0136 789 Pfam Leucine Rich Repeat 101 120 IPR001611 GO:0005515(InterPro)
Cam02g0136 789 MobiDBLite consensus disorder prediction 255 280 - -
Cam02g0136 789 Gene3D Ribonuclease Inhibitor 39 256 IPR032675 -
Cam02g0136 789 MobiDBLite consensus disorder prediction 281 306 - -
Cam02g0136 789 Pfam Protein tyrosine and serine/threonine kinase 501 773 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam02g0136 789 Gene3D Transferase(Phosphotransferase) domain 1 578 780 - -
Cam02g0136 789 Gene3D Phosphorylase Kinase; domain 1 470 576 - -
Cam02g0136 789 MobiDBLite consensus disorder prediction 247 312 - -
Cam02g0136 789 MobiDBLite consensus disorder prediction 357 411 - -
Cam02g0136 789 PANTHER LEUCINE RICH REPEAT KINASE 2 76 775 IPR051420 -
Cam02g0136 789 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 469 576 - -
Cam02g0136 789 MobiDBLite consensus disorder prediction 435 456 - -
Cam02g0136 789 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 35 260 - -
Cam02g0136 789 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 577 785 - -
Cam02g0136 789 SUPERFAMILY Protein kinase-like (PK-like) 475 773 IPR011009 -
Cam02g0136 789 SUPERFAMILY L domain-like 54 241 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0136 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0136 Cam-Chr2:2464377 Cam07g1140 Cam-Chr7:25833262 1.90E-106 dispersed
Cam01g2335 Cam-Chr1:35453964 Cam02g0136 Cam-Chr2:2464377 5.00E-136 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam02g0136 . 34 787 Strubbelig Receptor Gene Family AT4G03390 62.5 1.7e-205 713.0
Cam01g2335 . 17 709 Strubbelig Receptor Gene Family AT4G03390 51.7 1.8e-141 500.4
Cam09g0143 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 7.5e-92 335.5
Cam10g1702 . 9 532 Strubbelig Receptor Gene Family AT5G06820 56.0 2.3e-159 559.7
Cam08g0918 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.4 2.7e-194 675.6
Cam07g1140 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 3.6e-146 515.8
Cam09g0143 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.2 1.3e-122 437.6
Cam08g0918 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.7 1.1e-147 520.8
Cam01g0991 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 6.0e-85 312.4
Cam10g1702 . 9 532 Strubbelig Receptor Gene Family AT5G06820 56.0 2.3e-159 559.7
Cam02g0136 . 34 787 Strubbelig Receptor Gene Family AT4G03390 62.5 1.7e-205 713.0
Cam01g2335 . 17 709 Strubbelig Receptor Gene Family AT4G03390 51.7 1.8e-141 500.4
Cam09g0143 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 7.5e-92 335.5
Cam08g0918 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.7 1.1e-147 520.8
Cam08g0918 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.4 2.7e-194 675.6
Cam07g1140 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 3.6e-146 515.8
Cam09g0143 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.2 1.3e-122 437.6
Cam07g1140 . 1 719 Strubbelig Receptor Gene Family AT1G53730 59.1 1.0e-204 710.3
Cam09g0143 . 1 712 Strubbelig Receptor Gene Family AT1G53730 60.7 1.3e-186 650.2
Cam08g0918 . 20 690 Strubbelig Receptor Gene Family AT1G53730 50.1 4.9e-154 542.0
Cam01g0991 . 17 689 Strubbelig Receptor Gene Family AT1G53730 50.9 3.4e-147 519.2
Cam07g1140 . 11 714 Strubbelig Receptor Gene Family AT3G14350 56.7 4.8e-183 638.3
Cam09g0143 . 6 702 Strubbelig Receptor Gene Family AT3G14350 55.4 1.6e-167 586.6
Cam01g0991 . 138 711 Strubbelig Receptor Gene Family AT4G22130 63.0 1.3e-178 623.2
Cam07g1140 . 398 724 Strubbelig Receptor Gene Family AT4G22130 64.1 2.7e-120 429.5
Cam09g0143 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.6 6.3e-117 418.3
Cam02g0136 . 484 789 Strubbelig Receptor Gene Family AT4G22130 59.9 3.5e-107 386.0
Cam08g0918 . 357 704 Strubbelig Receptor Gene Family AT4G22130 52.4 1.2e-99 360.9
Cam01g2335 . 442 709 Strubbelig Receptor Gene Family AT4G22130 60.0 1.3e-90 330.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003611 2 1 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 0 1 1 1 1 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84938 PF07714 PK_Tyr_Ser-Thr 1.50E-42 CL0016 Cam PK