Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0142 ATGACAATTTTTTCCTTCTTCACTAGAGCTTCGAGAGCTTTTCATGGCTCCCCTGCATATTCAAAGCTTCTACTCATCAGCACCCTAAGTAGCGGAGGTCTATTGGCATATGCAGATTCACAATCAGACGTTGACAGTCCTATTGAAGAGTGCCGAAAAAAGAGAATTCTAGTGCTTGGAACAGGATGGGCCGGTACCAGTTTCCTCAAGGATCTGGATGCTTCAAAATATGATGTTCAGGTTGTTTCGCCTCAAAATTATTTCTCATTTACTCCTTTATTGCCTAGTGTTACATGTGGATCAGTTGAAGCACGAAGCATTGTTGAACCGGTTCGAAACATCGTGAAGAAGAGAAAAGGTGAAATTAAATTCTGGGAAGCTGAATGCATTAGGATTGATGCTGCTAACAAGAAGGTTTTCTGCCGGTCTAATGTTGACAACAACTTGGTTGGAAATAGGGAGTTTGCGTTAGAATATGACTATTTGATAATAGCAATGGGAGCGCAAGTTAATACTTTTAATACTCCTGGTGTGAAGGAGAACTGCCATTTTCTCAAGGAAGTGGAAGATGCTCAGAAGATCCGCAGAAGTGTGATAGATTGCTTTGAAATGGCTGTGATTCCTAGTCTAAGTGAAGAAGAGCGAAGGAGAAATCTTCATTTCGTTATTGTTGGAGGGGGTCCCACTGGGGTTGAATTTGCTGCAGAGCTTCATGACTTTTTTGAAGAAGATTTAGTTAACTTATATCCTTCGGTTAAAGATCTGGTGAAAATTTCAGTAATTCAGTCCGGAGATCACATCTTGAATGCGTTTGATGAAAGAATTAGTTCATTTGCCGAGCAAAAATTCCTAAGAGATGGTATCGATGTGTACACAGGATGTCGAGTTGTCAGTGTATCTGATAAAGAAATTAAGATGAAGGTGAAATCAACTGGAGAACTTTGTTCAATGCCGCATGGACTAATTGTGTGGTCTACGGGCATTATGACTCGTCCTGTCGTGAAGGATTTCATGGAGCAGATTGGCCAGGGTAGTAGACGCATTCTAGCCACTGATGAATGGCTTCAAGTGAAGGGCGCTCAAAATGTGTATGCCATTGGTGATTGTGCTACAATTGACCAACGCAAAATTATGGAAGATATCGCCGCCATATTTAAAGCCGCAGACAAAGATAACTCTGGAACCCTGACAGTTACAGAATTTCAAGATGTTCTAGATGATATCATCATAAGGTATCCTCAAGTAGAAATATATTTGAGGAGCAAACATCTACGCGATGTAAAAGATCTATTAAAAGATTCTCAGGGACATGAGAACGAAATAGATATTGAAGGATTTAAGTCGGCTCTTTCTCATGCTGACACGCAGATGAAAAGTCTGCCTGCTACTGCACAGGTTGCTGCCCAACAAGGTGCGTATCTTTGCAGGTGCTTCAACCGCAGGGAGCATTGCACTGAGAATCCTGAAGGCCCTCGACGTTTTAAGAGTTCTGGACGTCATCAGTTTCTTCCGTTTCGGTACAAGCACTTGGGACAGTTCGCTCCTTTAGGGGGAGAACAAGCAGCTGCAGAACTCCCTGGAGATTGGGTTTCCATGGGTCACAGCACTCAATGGCTATGGTATTCTGTATATGCAAGCAAGCAAGTCAGCTGGCGCACAAGGTATCTAGTGGTATCAGATTGGACAAGGAAGTTCATATTTGGAAGAGACTCAAGCCGCATCTGA 1725 42.49 MTIFSFFTRASRAFHGSPAYSKLLLISTLSSGGLLAYADSQSDVDSPIEECRKKRILVLGTGWAGTSFLKDLDASKYDVQVVSPQNYFSFTPLLPSVTCGSVEARSIVEPVRNIVKKRKGEIKFWEAECIRIDAANKKVFCRSNVDNNLVGNREFALEYDYLIIAMGAQVNTFNTPGVKENCHFLKEVEDAQKIRRSVIDCFEMAVIPSLSEEERRRNLHFVIVGGGPTGVEFAAELHDFFEEDLVNLYPSVKDLVKISVIQSGDHILNAFDERISSFAEQKFLRDGIDVYTGCRVVSVSDKEIKMKVKSTGELCSMPHGLIVWSTGIMTRPVVKDFMEQIGQGSRRILATDEWLQVKGAQNVYAIGDCATIDQRKIMEDIAAIFKAADKDNSGTLTVTEFQDVLDDIIIRYPQVEIYLRSKHLRDVKDLLKDSQGHENEIDIEGFKSALSHADTQMKSLPATAQVAAQQGAYLCRCFNRREHCTENPEGPRRFKSSGRHQFLPFRYKHLGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRYLVVSDWTRKFIFGRDSSRI 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2513007 2517975 + CaPI482276_02g001420.1 Cam02g0142 119884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0142 574 Pfam NDH2 C-terminal domain 509 570 IPR054585 -
Cam02g0142 574 Gene3D - 46 397 - -
Cam02g0142 574 Gene3D - 423 573 - -
Cam02g0142 574 SUPERFAMILY EF-hand 329 456 IPR011992 -
Cam02g0142 574 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 422 573 - -
Cam02g0142 574 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 45 405 - -
Cam02g0142 574 PANTHER NADH DEHYDROGENASE 42 574 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Cam02g0142 574 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Cam02g0142 574 SUPERFAMILY FAD/NAD(P)-binding domain 53 272 IPR036188 -
Cam02g0142 574 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 380 IPR023753 GO:0016491(InterPro)
Cam02g0142 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 159 177 - -
Cam02g0142 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 56 75 - -
Cam02g0142 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 220 238 - -
Cam02g0142 574 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509(InterPro)
Cam02g0142 574 SMART efh_1 380 408 IPR002048 GO:0005509(InterPro)
Cam02g0142 574 SUPERFAMILY FAD/NAD(P)-binding domain 219 373 IPR036188 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0142 Cam-Chr2:2513007 Cam02g2018 Cam-Chr2:33203802 2.20E-72 dispersed
Cam01g2323 Cam-Chr1:35345855 Cam02g0142 Cam-Chr2:2513007 2.80E-62 wgd
Cam02g0142 Cam-Chr2:2513007 Cam02g1782 Cam-Chr2:30955707 9.60E-230 wgd
Cam02g0142 Cam-Chr2:2513007 Cam03g0554 Cam-Chr3:6376083 1.30E-237 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0142 K03885 - csv:101203130 1099.73