Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0217 ATGGACGCCGCCGCACCTTCCCCTTCCCCTCCTCTGCCTACTCCCACTCCCCTGCAATTTCCGGTTAACCTCAATTCCACCCTCCCCGATCCCAACTATTCTCCTCCTCCTCCGCCTCCTCCTCCCCCTCCGCCACCCCCTCCTCCTCCACCCTCCTCCTCCCACCGCCCCTTCTTCGACGAAATGAACTTCTTCCCCGCCGATGATAAATCCCGCGTCCTTCTCTCTGCCTCTCACTCCAATCTCACTCCCACCAAACTCGACTTCAATGTTAACACGGGGTTGAATCTCTTGACCACGAATTCGTGTAGCGATCAATCCATGGTGGACGATGGAGTTTCACCAAACCCAGAAGAAAAAAGAATAAAAAACGAGAGAGCAGTTCTTCAAGCTGAATTGGAGAGGATAAACTCGGAGAATCTACGATTAAAAGACATGTTAAATCAAGTGACGAGCAATTACCAAACACTGCAGATGCAATTCAACACGCTAATTCAAACCCAGAAAACAGGGGACGCCGGTGACCCGATTGAGGAAAACGCCGGCAGTGGCGGAGGGAATAATAATAATAATAATAATAATAATAATAATCATAATCATAATAATATTGGTAATAAGCTGGTGCCCAGGCAATTTATGGATCTTGGATTAGCGACCAATATGGAGAACGATGAGCCGTCAATGTCGTCGTCGGAAGGGAGGAGTGGAGAGCGGTCCCGGTCGCCGGGAACCACCGGAGAAGTAGCGTCGTCGAAACGGCATAGCCCAGATCAATCTTCCAATTGGGGTTCCAATAATAACAACAGCAACAACAATAATAAAGTTCCAAAATTCAGTTCTTCTTCGGGTAAAGATGTGGATCAAACTGAAGCTACCATGAGAAAGGCTAGAGTCTCCGTTCGAGCCAGATCAGAAGCCCCCATGATAACAGATGGATGTCAATGGAGAAAATATGGACAAAAAATGGCGAAGGGAAACCCTTGTCCACGAGCTTATTACCGGTGCACCATGGCCGCCGGCTGCCCAGTTAGAAAACAAGTACAAAGATGTGCAGAAGACAAAACAATTTTGATAACAACCTATGAAGGAAACCACAACCACCCATTGCCGCCGGCCGCCATGGCAATGGCTTCCACAACTTCATCGGCGGCCAGAATGCTTCTCTCAGGATCCATGTCAAGTGCAGATGGTTTAATGAACTCTAATTTTTTAGCAAGAACCCTATTGCCATGTTCTTCAAGCATGGCTACGATCTCAGCCTCAGCCCCATTTCCCACAGTCACATTGGACCTAACTCAAAACCCAAATCCTTTATTCCAACGCCCGGCTGCGGGTCACTTTCCTATCCCGTTTGCGGCCGGTCCGCCCCAAAGCTTCCCACAGATCTTCGGACATGCATTATACAATCAATCAAAATTCTCAGGCCTTCAAATGTCAAAGGATATTGAAGCACCACCACCTCCACCACTGCAGAATCCATTGGCCGACACGTTGAGTGCTGCGGGTGTAGCAATTGCATCCGACCCGAATTTCATTGCGGCATTGGCAACGGCAATGACGTCGCTGATCGGCGGATCGCATCATCAGAATGAGAATGGTAATGGCAGTAGTAATGTTGATAACAATACAAATAGCAACTCCCAACAGTAA 1650 48.3 MDAAAPSPSPPLPTPTPLQFPVNLNSTLPDPNYSPPPPPPPPPPPPPPPPPSSSHRPFFDEMNFFPADDKSRVLLSASHSNLTPTKLDFNVNTGLNLLTTNSCSDQSMVDDGVSPNPEEKRIKNERAVLQAELERINSENLRLKDMLNQVTSNYQTLQMQFNTLIQTQKTGDAGDPIEENAGSGGGNNNNNNNNNNNHNHNNIGNKLVPRQFMDLGLATNMENDEPSMSSSEGRSGERSRSPGTTGEVASSKRHSPDQSSNWGSNNNNSNNNNKVPKFSSSSGKDVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNSNFLARTLLPCSSSMATISASAPFPTVTLDLTQNPNPLFQRPAAGHFPIPFAAGPPQSFPQIFGHALYNQSKFSGLQMSKDIEAPPPPPLQNPLADTLSAAGVAIASDPNFIAALATAMTSLIGGSHHQNENGNGSSNVDNNTNSNSQQ 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3103043 3106175 - CaPI482276_02g002170.1 Cam02g0217 119959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0217 549 MobiDBLite consensus disorder prediction 170 205 - -
Cam02g0217 549 FunFam probable WRKY transcription factor 31 294 371 - -
Cam02g0217 549 SMART WRKY_cls 309 369 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam02g0217 549 SUPERFAMILY Formin homology 2 domain (FH2 domain) 40 46 - -
Cam02g0217 549 MobiDBLite consensus disorder prediction 526 549 - -
Cam02g0217 549 Gene3D WRKY domain 294 371 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam02g0217 549 Coils Coil 119 153 - -
Cam02g0217 549 MobiDBLite consensus disorder prediction 221 303 - -
Cam02g0217 549 ProSiteProfiles WRKY domain profile. 304 370 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam02g0217 549 MobiDBLite consensus disorder prediction 1 18 - -
Cam02g0217 549 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 109 530 IPR044810 GO:0003700(InterPro)
Cam02g0217 549 MobiDBLite consensus disorder prediction 1 60 - -
Cam02g0217 549 Pfam WRKY DNA -binding domain 311 368 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam02g0217 549 MobiDBLite consensus disorder prediction 30 55 - -
Cam02g0217 549 SUPERFAMILY WRKY DNA-binding domain 302 370 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam02g0217 549 MobiDBLite consensus disorder prediction 222 287 - -
Cam02g0217 549 MobiDBLite consensus disorder prediction 182 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0217 Cam-Chr2:3103043 Cam05g1152 Cam-Chr5:10744282 1.90E-41 dispersed
Cam01g2233 Cam-Chr1:34801480 Cam02g0217 Cam-Chr2:3103043 3.00E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51423 PF03106 WRKY 2.50E-24 CL0274 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0217 - - - 0.0