Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam02g0234 | ATGAACGAGGTTGTTCCATTTCATCGGGAAGCTAAAATTATGGCTCATCCTCTCTTCCCTCGCCTCCTCGCTGCCTACGTCAACTGCCAAAAGGTGGGTGCGCCGCCGGAAGTGGTGGCGAGGCTAGAGCAGGCGTGTGCCGTGGCGACGGGAAGCTGTAGGCCGGCGGGACGTGGGGATGATCCAGCGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGACCAAATATGAACAAGAGTTGACCAAACCTTTTAAAGAAGCAATGCTCTTCTTCTCAAGAATTGAGTCTCAGCTGAAAACCCTAGCAGTTTCTTCTGATGGTTTCGAGTTGGTTGGGCAAAACGAGTGCTCGAAGGAGATTGAGGTGGATATGAACGAAAACTACATAGACCCTCAAGCCGAAGAGAAGGAACTCAAAGGCCAACTTCTACGCAAATACAGCGGATATCTTGGGAGCCTAAAACAAGAGTTTTTGAAGAAGAAAAAGAATGGGAAGTTGCCAAAAGAAGCTAGACAACAATTGCTCGACTGGTGGAGTCGACACTACAAATGGCCATATCCCTCGGAGTCGCAAAAGGTGGCGTTGGCGGAGTCGACGGGGCTAGACTTGAAGCAGATCAATAATTGGTTTATTAACCAAAGAAAGCGCCATTGGAAGCCATCAGAGGATATGCAGTTTGTGGTGATGGATGCTGCTCATCCACATTACTATTTGGACAATGTCATATGCAATCCTTTCTCTATGGATTGTTCTTCTACTCTTTTCTGA | 774 | 47.42 | MNEVVPFHREAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARLEQACAVATGSCRPAGRGDDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFFSRIESQLKTLAVSSDGFELVGQNECSKEIEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNPFSMDCSSTLF | 257 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3226359 | 3230474 | - | CaPI482276_02g002340.1 | Cam02g0234 | 119976 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam02g0234 | 257 | SUPERFAMILY | Homeodomain-like | 161 | 236 | IPR009057 | - | |
Cam02g0234 | 257 | Pfam | KNOX1 domain | 11 | 47 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cam02g0234 | 257 | SMART | KNOX1_2 | 11 | 51 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cam02g0234 | 257 | SMART | HOX_1 | 161 | 226 | IPR001356 | GO:0003677(InterPro) | |
Cam02g0234 | 257 | FunFam | Homeobox protein knotted-1-like 2 | 164 | 226 | - | - | |
Cam02g0234 | 257 | ProSitePatterns | 'Homeobox' domain signature. | 197 | 220 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cam02g0234 | 257 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 26 | 229 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cam02g0234 | 257 | Pfam | ELK domain | 139 | 160 | IPR005539 | GO:0003677(InterPro) | |
Cam02g0234 | 257 | SMART | KNOX2_2 | 54 | 105 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cam02g0234 | 257 | Pfam | KNOX2 domain | 59 | 103 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cam02g0234 | 257 | Pfam | Homeobox KN domain | 179 | 218 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cam02g0234 | 257 | ProSiteProfiles | ELK domain profile. | 139 | 159 | IPR005539 | GO:0003677(InterPro) | |
Cam02g0234 | 257 | ProSiteProfiles | 'Homeobox' domain profile. | 159 | 222 | IPR001356 | GO:0003677(InterPro) | |
Cam02g0234 | 257 | CDD | homeodomain | 171 | 223 | IPR001356 | GO:0003677(InterPro) | |
Cam02g0234 | 257 | SMART | ELK_2 | 139 | 160 | IPR005539 | GO:0003677(InterPro) | |
Cam02g0234 | 257 | Gene3D | - | 164 | 226 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam02g0234 | Cam-Chr2:3226359 | Cam05g1932 | Cam-Chr5:28245587 | 1.10E-71 | dispersed | |
Cam01g2224 | Cam-Chr1:34737600 | Cam02g0234 | Cam-Chr2:3226359 | 1.00E-103 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51426 | PF03791 | KNOX2 | 4.00E-22 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam02g0234 | - | - | - | 0.0 |