Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0249 ATGTCTGAAGAGCAAGCAATTTCAAATGCCTTCATTTGCAGCATCCCATCACTTGGATCCATCAACAACCCTTCTGTTGTCAAGAAGAAGAGGAATCTCCCTGGAAATCCAGATCCCGAAGCGGAAGTTGTGTCGTTGTCACCTAAGACGCTAATGGCGACGAACCGATTCTTGTGTGAGATATGTGGGAAGGGTTTTCAAAGGGATCAAAACCTACAACTGCATAGGAGAGGGCACAATCTTCCATGGAAGCTAAAGCAAAGAAGCAATGGAAACAAAGAGCCAAGGAAGAGAGTTTATGTTTGTCCAGAGAAGAGTTGTGTACATCACCATCCTTCAAGGGCTCTTGGAGATCTCACAGGAATTAAAAAGCACTTTTGCAGGAAGCATGGGGAGAAGAAGTGGAAGTGTGAGAAATGCTCAAAGAAATATGCTGTGCAGTCAGATTGGAAAGCACACTCCAAAACTTGTGGTACCAAAGAGTATAAATGTGACTGTGGGACTCCATTTTCAAGGAGAGATAGCTATGTAACTCACAGAGCATATTGTGTAGCATTAGCAGAAGAAACAGCAAGATTAAATGCAGCATCAACCATGGCCAACAACAGCAACAATTCAATGGCTGATAGTTACAACAACTACCATTTCCTAAAGCCCACAAACAACAATAATCCTCCACAATTCTTCCCTTCCTCCAACTTTTTCAAACCAGATGAAACTTCCCATATGTTCCTCAATAACATTAATAATGTTACTCCCACAATAGGACTCCCCTTTTGGATGGCTACAAATTCTCACCAAATCAATTTCCCTCACTCACTACTTCCTCAACAAACAACAACAACAACAACAACAACAAATTCTGATGTTCTTTCTGTTCCTTCCTTATACAGCAATGAAGAACAACAATCATCCCATCAATTTATGGCTTCATCAGCCAACATGTCAGCTACTGTTTTGCTGCAAAAGGCTGCACAAATTGGAGTGACAACCTCCACAACAGACCCATCATTGATGGAAAGTTTTGGGTTGAAATTCAGTACAATAACTGATGGGAAAGCCTTGTTTTCAGGGCTTTATGGCTCAATAATGAACTCAAACTCCAACATTATTCCTAGTTGTTGTAGCCTTGAAAATGGTGGAGATCATCATCAGGACTCTGAAATATACTCTGCACCAGCAAAGAGAATGAGACACACTGTTAGTGAAGAGAGTGTTACTGGTGGAGAAGGAGAAACAAGGGATTTCTTGGGTGTGGGAATGCACTCCATATGCCATCCATCACCAGTAAATGGATGGATCTGA 1305 41.53 MSEEQAISNAFICSIPSLGSINNPSVVKKKRNLPGNPDPEAEVVSLSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNGNKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSRRDSYVTHRAYCVALAEETARLNAASTMANNSNNSMADSYNNYHFLKPTNNNNPPQFFPSSNFFKPDETSHMFLNNINNVTPTIGLPFWMATNSHQINFPHSLLPQQTTTTTTTTNSDVLSVPSLYSNEEQQSSHQFMASSANMSATVLLQKAAQIGVTTSTTDPSLMESFGLKFSTITDGKALFSGLYGSIMNSNSNIIPSCCSLENGGDHHQDSEIYSAPAKRMRHTVSEESVTGGEGETRDFLGVGMHSICHPSPVNGWI 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3368607 3371487 + CaPI482276_02g002490.1 Cam02g0249 119991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0249 434 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 161 200 - -
Cam02g0249 434 FunFam protein indeterminate-domain 12-like 36 106 - -
Cam02g0249 434 FunFam protein indeterminate-domain 5, chloroplastic-like 113 192 - -
Cam02g0249 434 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cam02g0249 434 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 96 130 - -
Cam02g0249 434 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cam02g0249 434 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Cam02g0249 434 SUPERFAMILY beta-beta-alpha zinc fingers 56 155 IPR036236 -
Cam02g0249 434 Gene3D Classic Zinc Finger 53 80 - -
Cam02g0249 434 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 423 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cam02g0249 434 SMART c2h2final6 135 155 IPR013087 -
Cam02g0249 434 SMART c2h2final6 57 79 IPR013087 -
Cam02g0249 434 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 134 158 - -
Cam02g0249 434 Gene3D Classic Zinc Finger 91 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0249 Cam-Chr2:3368607 Cam02g1069 Cam-Chr2:17850030 3.20E-100 dispersed
Cam02g0249 Cam-Chr2:3368607 Cam04g0835 Cam-Chr4:22587034 8.40E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51428 PF00096 zf-C2H2 0.014 CL0361 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0249 K25870 - csv:101207997 646.351