Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0257 ATGCCAAAGAACAATGGAAAGGGAGGAAAGAATAGGAAGAGAGGTACAGATGACGAGAAGCGTGAGGTTGTGTTTAAGGAAGATGGGCAAGAATATGCTCAAGTGCTACGAATGCTAGGTAATGGTCGATGTGAAGCGATGTGTATCGATGGGATTAAACGTCTCTGCCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATTATACTCGTTGGTCTTCATGACTATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGTCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGTTACCCGAGAATACACGTCTTAATGAGGGTATCGTGGGGGGTATGGATGATGATGATGATGATGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATTTAG 438 42.01 MPKNNGKGGKNRKRGTDDEKREVVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCHIRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGGMDDDDDDDEGGGDAYIEFEDEDIDKI 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3430485 3430922 + CaPI482276_02g002570.1 Cam02g0257 119999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0257 145 MobiDBLite consensus disorder prediction 1 21 - -
Cam02g0257 145 CDD S1_IF1A 30 106 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Cam02g0257 145 ProSiteProfiles S1 domain IF1 type profile. 19 93 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Cam02g0257 145 Gene3D - 2 145 IPR012340 -
Cam02g0257 145 Hamap Translation initiation factor 1A [eif1a]. 14 107 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Cam02g0257 145 ProSitePatterns Eukaryotic initiation factor 1A signature. 38 60 IPR018104 GO:0003743(InterPro)|GO:0006413(InterPro)
Cam02g0257 145 NCBIfam translation initiation factor eIF-1A 14 107 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Cam02g0257 145 SUPERFAMILY Nucleic acid-binding proteins 2 141 IPR012340 -
Cam02g0257 145 Pfam Translation initiation factor 1A / IF-1 29 90 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Cam02g0257 145 MobiDBLite consensus disorder prediction 119 145 - -
Cam02g0257 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005737(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)
Cam02g0257 145 SMART eIF1neu4 25 107 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Cam02g0257 145 MobiDBLite consensus disorder prediction 113 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0257 Cam-Chr2:3430485 Cam07g1586 Cam-Chr7:30570659 2.20E-45 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0257 K03236 - csv:101207840 255.373