Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam02g0257 | ATGCCAAAGAACAATGGAAAGGGAGGAAAGAATAGGAAGAGAGGTACAGATGACGAGAAGCGTGAGGTTGTGTTTAAGGAAGATGGGCAAGAATATGCTCAAGTGCTACGAATGCTAGGTAATGGTCGATGTGAAGCGATGTGTATCGATGGGATTAAACGTCTCTGCCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATTATACTCGTTGGTCTTCATGACTATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGTCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGTTACCCGAGAATACACGTCTTAATGAGGGTATCGTGGGGGGTATGGATGATGATGATGATGATGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATTTAG | 438 | 42.01 | MPKNNGKGGKNRKRGTDDEKREVVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRLCHIRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGGMDDDDDDDEGGGDAYIEFEDEDIDKI | 145 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3430485 | 3430922 | + | CaPI482276_02g002570.1 | Cam02g0257 | 119999 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam02g0257 | 145 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cam02g0257 | 145 | CDD | S1_IF1A | 30 | 106 | IPR001253 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cam02g0257 | 145 | ProSiteProfiles | S1 domain IF1 type profile. | 19 | 93 | IPR006196 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cam02g0257 | 145 | Gene3D | - | 2 | 145 | IPR012340 | - | |
Cam02g0257 | 145 | Hamap | Translation initiation factor 1A [eif1a]. | 14 | 107 | IPR001253 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cam02g0257 | 145 | ProSitePatterns | Eukaryotic initiation factor 1A signature. | 38 | 60 | IPR018104 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cam02g0257 | 145 | NCBIfam | translation initiation factor eIF-1A | 14 | 107 | IPR001253 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cam02g0257 | 145 | SUPERFAMILY | Nucleic acid-binding proteins | 2 | 141 | IPR012340 | - | |
Cam02g0257 | 145 | Pfam | Translation initiation factor 1A / IF-1 | 29 | 90 | IPR006196 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cam02g0257 | 145 | MobiDBLite | consensus disorder prediction | 119 | 145 | - | - | |
Cam02g0257 | 145 | PANTHER | EIF-1A | 1 | 145 | IPR001253 | GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005737(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro) | |
Cam02g0257 | 145 | SMART | eIF1neu4 | 25 | 107 | IPR001253 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cam02g0257 | 145 | MobiDBLite | consensus disorder prediction | 113 | 145 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam02g0257 | Cam-Chr2:3430485 | Cam07g1586 | Cam-Chr7:30570659 | 2.20E-45 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam02g0257 | K03236 | - | csv:101207840 | 255.373 |