Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0285 ATGCTCTTAGCTGTTATCAACTTTGCCGGGAACTTCATCGGACGTCTCTCAGCCGGAGCACCATCACTGCTTCCTCAACTCTTTGATTCGCCTGCTAGAATTCCGAAGACGCACTTGTTTCAGTATACAACTAGACGTGGCGTGGCATCCAGTTTCTGTTTCAATCAAAGGGACCAGTTAGAGAATGAAGTTGATTCTGATCAATTGGAGCATGAAAACAGTTCAGAAAGTCAACCGCAAACGTCTCAGGACGATCCTGGTGGAACTAATGTATCAAAATCAGATCACAAATGCACAGGGGCTGCCAGTATTACACTTGAAGAAGCTGTCAAGCAGCCTGAAGTTACAATCGAACAAGTGGATCGAGGAGAAATCTCTAATATAGTGACTGAGAAAGTGACCCATAAGTCAATTACTGCAGAGCAGAACTCCCATTCTGATTTGAAAGTATGTATTACCTCTACTATACGAGAGAAAGTATCAGAGGATGGGTATAACTGGCGGAAATATGGTCAGAAACTGGTTAAGGGAAATGTCTTTGTTAGAAGCTATTACAGATGTACGCATCCTACTTGCATGGTGAAAAAACAACTGGAGCGCACTCATGATGGGAAGATCACAGACACTGTTTACTTTGGCCAGCATGATCATCCTAAACCTCAACCTCACATTCCAGTTGCTGTTGGAGTCGTTACCATGGTTGAAGAAAAATTAGATGAACATGCTTCTGGAAATTCTCAAGATAAGACCTCCATTGCGCCTGGCCAGACACTTCATCAAACTGAGCTAGCTGATATGCGTCAACCGTCATCAGTTATGGCCAGTGATAATGTAAAAGATGAAGCTTCGAAAAGGTCTAGGATTAATGATGAGGTTGACAGTGATGATACACCAGACTTGAAACGAGAGAAGAAAAGATGTAATATTGACGTGACAGTAGCAGACAAGTCAACTGTTGAATCTCGGGTTGTTGTTCAAACTCCTAGCGAGGTTGACATCGTCAATGATGGATACCGCTGGCGGAAGTATGGACAGAAATTGGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCGTCTTATGATCCAAAAGTGGTGCTTACCACGTATGAGGGTCAGCATGACCATGATATGCCTCCTACAAGGACGGTGACGTTGAATTCAGTTGGATCCACAGCAGCCCATAGTGATGAGACAAAACCAAAACCGGTCGGTAGTTCCATTGGCCATAATACGGTGGTTCATGCTACTAAGGATTCTCGAAATAATTCGAGTTCTGAAGGCAAATTAATTGAAAAGAATGGCAAGTCGAATGCCACAGAAGCAAGTGATGGCATAGTCCTCGATATGGTGGTCAATCCTAGTCCAGGAGTTGCGAGTGGACAAAATAAGCAGCTTAAAGTAGCAATTGAAAGCTAA 1464 43.37 MLLAVINFAGNFIGRLSAGAPSLLPQLFDSPARIPKTHLFQYTTRRGVASSFCFNQRDQLENEVDSDQLEHENSSESQPQTSQDDPGGTNVSKSDHKCTGAASITLEEAVKQPEVTIEQVDRGEISNIVTEKVTHKSITAEQNSHSDLKVCITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDTVYFGQHDHPKPQPHIPVAVGVVTMVEEKLDEHASGNSQDKTSIAPGQTLHQTELADMRQPSSVMASDNVKDEASKRSRINDEVDSDDTPDLKREKKRCNIDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASYDPKVVLTTYEGQHDHDMPPTRTVTLNSVGSTAAHSDETKPKPVGSSIGHNTVVHATKDSRNNSSSEGKLIEKNGKSNATEASDGIVLDMVVNPSPGVASGQNKQLKVAIES 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3636466 3640332 + CaPI482276_02g002850.1 Cam02g0285 120027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0285 487 Gene3D WRKY domain 321 387 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam02g0285 487 SMART WRKY_cls 161 219 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam02g0285 487 SMART WRKY_cls 334 393 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam02g0285 487 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 202 426 IPR044810 GO:0003700(InterPro)
Cam02g0285 487 MobiDBLite consensus disorder prediction 425 456 - -
Cam02g0285 487 SUPERFAMILY WRKY DNA-binding domain 326 394 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam02g0285 487 MobiDBLite consensus disorder prediction 262 277 - -
Cam02g0285 487 Gene3D WRKY domain 146 221 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam02g0285 487 MobiDBLite consensus disorder prediction 73 96 - -
Cam02g0285 487 ProSiteProfiles WRKY domain profile. 156 220 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam02g0285 487 SUPERFAMILY WRKY DNA-binding domain 156 220 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam02g0285 487 MobiDBLite consensus disorder prediction 278 300 - -
Cam02g0285 487 FunFam WRKY transcription factor 149 221 - -
Cam02g0285 487 MobiDBLite consensus disorder prediction 404 458 - -
Cam02g0285 487 Pfam WRKY DNA -binding domain 335 392 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam02g0285 487 Pfam WRKY DNA -binding domain 162 218 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam02g0285 487 ProSiteProfiles WRKY domain profile. 329 394 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam02g0285 487 Coils Coil 57 77 - -
Cam02g0285 487 FunFam WRKY transcription factor 57 320 394 - -
Cam02g0285 487 MobiDBLite consensus disorder prediction 63 96 - -
Cam02g0285 487 MobiDBLite consensus disorder prediction 262 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0285 Cam-Chr2:3636466 Cam10g0374 Cam-Chr10:6010127 3.10E-59 dispersed
Cam10g0431 Cam-Chr10:6658452 Cam02g0285 Cam-Chr2:3636466 2.30E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51430 PF03106 WRKY 1.30E-25 CL0274 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0285 K18834 - csv:101212482 749.969