Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam02g0285 | ATGCTCTTAGCTGTTATCAACTTTGCCGGGAACTTCATCGGACGTCTCTCAGCCGGAGCACCATCACTGCTTCCTCAACTCTTTGATTCGCCTGCTAGAATTCCGAAGACGCACTTGTTTCAGTATACAACTAGACGTGGCGTGGCATCCAGTTTCTGTTTCAATCAAAGGGACCAGTTAGAGAATGAAGTTGATTCTGATCAATTGGAGCATGAAAACAGTTCAGAAAGTCAACCGCAAACGTCTCAGGACGATCCTGGTGGAACTAATGTATCAAAATCAGATCACAAATGCACAGGGGCTGCCAGTATTACACTTGAAGAAGCTGTCAAGCAGCCTGAAGTTACAATCGAACAAGTGGATCGAGGAGAAATCTCTAATATAGTGACTGAGAAAGTGACCCATAAGTCAATTACTGCAGAGCAGAACTCCCATTCTGATTTGAAAGTATGTATTACCTCTACTATACGAGAGAAAGTATCAGAGGATGGGTATAACTGGCGGAAATATGGTCAGAAACTGGTTAAGGGAAATGTCTTTGTTAGAAGCTATTACAGATGTACGCATCCTACTTGCATGGTGAAAAAACAACTGGAGCGCACTCATGATGGGAAGATCACAGACACTGTTTACTTTGGCCAGCATGATCATCCTAAACCTCAACCTCACATTCCAGTTGCTGTTGGAGTCGTTACCATGGTTGAAGAAAAATTAGATGAACATGCTTCTGGAAATTCTCAAGATAAGACCTCCATTGCGCCTGGCCAGACACTTCATCAAACTGAGCTAGCTGATATGCGTCAACCGTCATCAGTTATGGCCAGTGATAATGTAAAAGATGAAGCTTCGAAAAGGTCTAGGATTAATGATGAGGTTGACAGTGATGATACACCAGACTTGAAACGAGAGAAGAAAAGATGTAATATTGACGTGACAGTAGCAGACAAGTCAACTGTTGAATCTCGGGTTGTTGTTCAAACTCCTAGCGAGGTTGACATCGTCAATGATGGATACCGCTGGCGGAAGTATGGACAGAAATTGGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCGTCTTATGATCCAAAAGTGGTGCTTACCACGTATGAGGGTCAGCATGACCATGATATGCCTCCTACAAGGACGGTGACGTTGAATTCAGTTGGATCCACAGCAGCCCATAGTGATGAGACAAAACCAAAACCGGTCGGTAGTTCCATTGGCCATAATACGGTGGTTCATGCTACTAAGGATTCTCGAAATAATTCGAGTTCTGAAGGCAAATTAATTGAAAAGAATGGCAAGTCGAATGCCACAGAAGCAAGTGATGGCATAGTCCTCGATATGGTGGTCAATCCTAGTCCAGGAGTTGCGAGTGGACAAAATAAGCAGCTTAAAGTAGCAATTGAAAGCTAA | 1464 | 43.37 | MLLAVINFAGNFIGRLSAGAPSLLPQLFDSPARIPKTHLFQYTTRRGVASSFCFNQRDQLENEVDSDQLEHENSSESQPQTSQDDPGGTNVSKSDHKCTGAASITLEEAVKQPEVTIEQVDRGEISNIVTEKVTHKSITAEQNSHSDLKVCITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDTVYFGQHDHPKPQPHIPVAVGVVTMVEEKLDEHASGNSQDKTSIAPGQTLHQTELADMRQPSSVMASDNVKDEASKRSRINDEVDSDDTPDLKREKKRCNIDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASYDPKVVLTTYEGQHDHDMPPTRTVTLNSVGSTAAHSDETKPKPVGSSIGHNTVVHATKDSRNNSSSEGKLIEKNGKSNATEASDGIVLDMVVNPSPGVASGQNKQLKVAIES | 487 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3636466 | 3640332 | + | CaPI482276_02g002850.1 | Cam02g0285 | 120027 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam02g0285 | 487 | Gene3D | WRKY domain | 321 | 387 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam02g0285 | 487 | SMART | WRKY_cls | 161 | 219 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam02g0285 | 487 | SMART | WRKY_cls | 334 | 393 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam02g0285 | 487 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 202 | 426 | IPR044810 | GO:0003700(InterPro) | |
Cam02g0285 | 487 | MobiDBLite | consensus disorder prediction | 425 | 456 | - | - | |
Cam02g0285 | 487 | SUPERFAMILY | WRKY DNA-binding domain | 326 | 394 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam02g0285 | 487 | MobiDBLite | consensus disorder prediction | 262 | 277 | - | - | |
Cam02g0285 | 487 | Gene3D | WRKY domain | 146 | 221 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam02g0285 | 487 | MobiDBLite | consensus disorder prediction | 73 | 96 | - | - | |
Cam02g0285 | 487 | ProSiteProfiles | WRKY domain profile. | 156 | 220 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam02g0285 | 487 | SUPERFAMILY | WRKY DNA-binding domain | 156 | 220 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam02g0285 | 487 | MobiDBLite | consensus disorder prediction | 278 | 300 | - | - | |
Cam02g0285 | 487 | FunFam | WRKY transcription factor | 149 | 221 | - | - | |
Cam02g0285 | 487 | MobiDBLite | consensus disorder prediction | 404 | 458 | - | - | |
Cam02g0285 | 487 | Pfam | WRKY DNA -binding domain | 335 | 392 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam02g0285 | 487 | Pfam | WRKY DNA -binding domain | 162 | 218 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam02g0285 | 487 | ProSiteProfiles | WRKY domain profile. | 329 | 394 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam02g0285 | 487 | Coils | Coil | 57 | 77 | - | - | |
Cam02g0285 | 487 | FunFam | WRKY transcription factor 57 | 320 | 394 | - | - | |
Cam02g0285 | 487 | MobiDBLite | consensus disorder prediction | 63 | 96 | - | - | |
Cam02g0285 | 487 | MobiDBLite | consensus disorder prediction | 262 | 300 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam02g0285 | Cam-Chr2:3636466 | Cam10g0374 | Cam-Chr10:6010127 | 3.10E-59 | dispersed | |
Cam10g0431 | Cam-Chr10:6658452 | Cam02g0285 | Cam-Chr2:3636466 | 2.30E-69 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51430 | PF03106 | WRKY | 1.30E-25 | CL0274 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam02g0285 | K18834 | - | csv:101212482 | 749.969 |