Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0287 ATGTCTCAGAATTCTAAAGTCTCTTGTTCTAAGGTTAGATTACTAGGTGGTTTCAAGGTGAAGAGGGCTAAGGAGCATTTCCATGGCCAAGGGTGGAGTAACCTACTTTATATCTTGCCATTTGGTGTAATTTTGATTCTGGGTGTTTGGTATATCTTTAGTCTTTGTGATGGGAGTTCAGTTCGGGAAGTGGAGATTCCAAATACGTGTAAAGAGAAGAGCTGGAACTTTCTGAAGCATTTCAATGTCAGTGAGAGTCAATTTCATGCTTTGGATTCGTTCTTCTTTCATTCAGATCAGACAGCATCTCTCCTCTGTGCTAAAGACTCAGAGCCTGGCAATGCACTGAAAGACTGCATTCCTTGTGCATTGAAGATTTTGGAACGGGAACAAGAATCGCAAAAGAAGCATGGGTGGCTTTCTGAAGATCTACAATCTGAAGGCCAGTGCCCAATTAGGGGTGAGATAGAGTCCTTCAATATTGGTCAATTGCAGTTAGTGGACAAGATACACTCACTTACTTCAAAATCTTCTTTTGCATTTGTGTCTCCCTGTCTTCAGATTCATAAAGAGAGGATCTTGCATACTAGGGAAATTGGAAATGGGCATTCTCGAAGTTTGAATGGATTAGTAATGGCATGCTTATGGATCCTTGCTGTAGTGATATCATGCCTGAAGATGTCTGGTTTTCATTTGAAATTAAAGAACCACATACACAAGCCAATAAAGCATCCATCGGTTGAGAATCAGCCAGTGATTCAGCTACAGCAGGTGTTGCTACAGCAGCAGTTAGATCCATCTCCAAGTCCTCCAAAAGGGGCTGGAAAATGGAGAAAGAAGCTTCTTATAATATTTGTTTTGCTTGGAATTATTGGATCCTTTTGGCTCTTTTGGTATTTGAACAACAAAATCATCTTGAGGAGAGAAGAAACACTTTCTAACATGTGCGATGAGCGAGCTCGAATGTTACAGGATCAATTCAACGTTAGCATGAACCATGTTCATGCCTTGGCTATTCTGGTCTCCACTTTTCATCATGGCAAGCATCCTTCTGCCATTGATCAGAAAACATTCAGTGAATATGCAGAAAGAACAGCTTTTGAACGACCACTCACCAGTGGGGTGGCTTATGCTTTGAAAGTTGATCATTCAGACAGAAAGCGATTTGAAGAGGAACATGGGTGGACAATTAAGAAGATGGGAACAGAGGACCAGACCCTGGTTCAGGATTCTATTCCTGAGAATTTAGACCCTGCTCCCTTTCAGGATGAATATGCACCTGTGATATTTTCACAAGAAACTGTATCTCATATAGTTTCCATTGACATGATGTCTGGAAAGGAAGACCGCGAAAACATCTTGCGAGCGAGGGCTTCAGGGAAGGGAGTGCTGACATCTCCTTTCAAGCTTCTTAAGTCCAATCACCTAGGTGTTGTGCTCACTTTTGCTGTCTATAACGCTGAGCTTCCTCTTGATGCAACACCAGAGCAACGTATTGAAGCTACTGTTGGGTATCTAGGGGCATCCTATGATGTTCCATCACTGGTGGACAAGCTTCTGCACCAACTTTCTAGCAAACAATCAATTGTTGTTGATGTTTACGACACAACTAATGCATCTGCTCCCATTAAGATGTATGGATCTGATGTAATAGATACTGGTCTATTGCACATTAGCAACCTGGATTTTGGAGACCCTCAAAGGAAGCATGAGATGCATTGCAGATTTAAGCAGAAACCACAATTACCATGGATGGCTATAAATGCATCAGTGGGAGTTCTGGTTATTACTTTACTAGTTGGCCATATATTTTATGCGGCCATAAGTCGAATCGCAAAAGTGGAAAATGACTATGATGAGATGATGAAACTCAAAAGTCGCGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCAACTGTTTCTCACGAGATCAGGACGCCAATGAATGGTGTTTTAGGGATGCTGAAAATGCTGATGGACACTGATCTTGACCCAAACCAACTGGACTGTGCCCAGACTGCATATGATAGTGGGAAAGAATTAATATCACTAATAAATGAGGTTCTTGACCAAGCTAAAATAGAATCAGGCAGGCTTGAACTTGAAGATGTACCATTCGATCCACGAGCTTTACTTGATAATGTGCTGTCAATGTTCTCTGGAAAATGTCATGAGAAGGGAATAGAGTTAGCTGTTTATGTCTCTAATTTGGTCCCTGAAGTTCTCATCGGTGACCCTGGACGCTTCCGGCAGATAATTACCAATCTTGTGGGAAATTCAATCAAGTTCACCAAGGACAAAGGACACATATTTGTTACTGTACACCTGGCAGACGAGGTGAGGACTCCCCTCGAGGCAATGGACAGTGTGCTAAGACAAGGCCTACATTTAGTGAATGGGACGCCGAGAAAAAGTCACAATACATTAAGTGGGTTTCCAGTGGTCGAGAGGTGCAAGAGTTGGGAGTTTTTCGAGATATTTAGAAGAACAGATGTGATGAAAGAAAACGACGACGTAATTAAGTTGCTTGTATCAGTTGAGGATACGGGTCATGGAATTCCTTTAGATGCACAAAGTCGAATTTTTATGCCTTTTATGCAAGCAGATAGTTCCACTTCACGCAAGTATGGTGGGACCGGAATAGGTCTGAGCATCAGCAAATGTCTGGTGGATCTAATGGGTGGAGAGATAGGTTTTGTGAGCCAACCTGGTGTTGGTAGCACATTTTCATTTACTGGATGTTTGAGAAAAGGTGATACGAGGTCTCTTGATACAAAGTTGCAGCAGAATGATTCAGCCATGTTAGATTTCCGAGGACTGCGAGCGTTGGTACTGGATGATAGAAGCATTCGAGCTGAGGTAACAAAATATCATCTGAAGAGGTTAGGGATCTCAGTGGACATAGTTTCGAGTCTGGCTTCAGCACATGAATACTTAACTAATAATTGCATCAAAAGTCCATCCAAGCGTTTGGCCATGGTGCTTATTGACAAAGATGTATGGGATAAGGAAACCGATCCGACAAGCCCTCGCTTGTTTAAAGAACATGGGGTAAATGGGAAGGAAGAATGGAGAGGAAGTCCTAAGATCTTTCTCTTAGCCACCTCCATTAGCCCTCAAGAGACTAGAGCTCTCAAGTCGGCTGGTTATGTTGATAATGTAATGACAAAACCCCTTAGGTCAGGTGTCCTGATTGGATGTTTCCAGGAAGCTTTCGGGAAGGTCAACCGAAAGAAACCGTCTATTCTGGGGAACTTACTGAGAGAAAAGCAGATATTGGTGGTTGATGACAATGCAGTCAATAGACGAGTTGCCGAAGGTGCTCTAAAGAAATATGGAGCAAAGGTTACCTGTGTGGAAAGTGGTGGCGCTGCTATTTCATTGTTAAAACCACCACACAAGTTCAATGCTTGCTTCATGGATCTTCAAATGCCTGAGATGGATGGGTTTGAAGCAACACGGCAGATACGAAATAACGAAAATAAGGTTAACGAGGACATTGCTTCTGGGAAAGCATCAATTGAGATGTTTGGGAATGTGGCTCATTGGCATACACCCGTGTTGGCCATGACAGCTGATGTGATTCAGGCTACAAATGAAGCATGCATGAATTGTGGGATGGATGGTTATGTAGCAAAGCCTTTTGAAGAAGAAAAATTATATTCAGCAGTCGCTCGTTTCTTTGAGTCCGATGCTCGAGTAGAACATGAATAG 3720 42.45 MSQNSKVSCSKVRLLGGFKVKRAKEHFHGQGWSNLLYILPFGVILILGVWYIFSLCDGSSVREVEIPNTCKEKSWNFLKHFNVSESQFHALDSFFFHSDQTASLLCAKDSEPGNALKDCIPCALKILEREQESQKKHGWLSEDLQSEGQCPIRGEIESFNIGQLQLVDKIHSLTSKSSFAFVSPCLQIHKERILHTREIGNGHSRSLNGLVMACLWILAVVISCLKMSGFHLKLKNHIHKPIKHPSVENQPVIQLQQVLLQQQLDPSPSPPKGAGKWRKKLLIIFVLLGIIGSFWLFWYLNNKIILRREETLSNMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKTFSEYAERTAFERPLTSGVAYALKVDHSDRKRFEEEHGWTIKKMGTEDQTLVQDSIPENLDPAPFQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNAELPLDATPEQRIEATVGYLGASYDVPSLVDKLLHQLSSKQSIVVDVYDTTNASAPIKMYGSDVIDTGLLHISNLDFGDPQRKHEMHCRFKQKPQLPWMAINASVGVLVITLLVGHIFYAAISRIAKVENDYDEMMKLKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDPNQLDCAQTAYDSGKELISLINEVLDQAKIESGRLELEDVPFDPRALLDNVLSMFSGKCHEKGIELAVYVSNLVPEVLIGDPGRFRQIITNLVGNSIKFTKDKGHIFVTVHLADEVRTPLEAMDSVLRQGLHLVNGTPRKSHNTLSGFPVVERCKSWEFFEIFRRTDVMKENDDVIKLLVSVEDTGHGIPLDAQSRIFMPFMQADSSTSRKYGGTGIGLSISKCLVDLMGGEIGFVSQPGVGSTFSFTGCLRKGDTRSLDTKLQQNDSAMLDFRGLRALVLDDRSIRAEVTKYHLKRLGISVDIVSSLASAHEYLTNNCIKSPSKRLAMVLIDKDVWDKETDPTSPRLFKEHGVNGKEEWRGSPKIFLLATSISPQETRALKSAGYVDNVMTKPLRSGVLIGCFQEAFGKVNRKKPSILGNLLREKQILVVDDNAVNRRVAEGALKKYGAKVTCVESGGAAISLLKPPHKFNACFMDLQMPEMDGFEATRQIRNNENKVNEDIASGKASIEMFGNVAHWHTPVLAMTADVIQATNEACMNCGMDGYVAKPFEEEKLYSAVARFFESDARVEHE 1239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3642023 3652308 - CaPI482276_02g002870.1 Cam02g0287 120029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0287 1239 Gene3D - 936 1079 - -
Cam02g0287 1239 Gene3D - 1087 1236 - -
Cam02g0287 1239 ProSiteProfiles CHASE domain profile. 349 573 IPR006189 -
Cam02g0287 1239 SUPERFAMILY CheY-like 938 1074 IPR011006 -
Cam02g0287 1239 FunFam Histidine kinase 4 606 697 - -
Cam02g0287 1239 SMART CHASE_2 349 548 IPR006189 -
Cam02g0287 1239 Gene3D - 606 697 - -
Cam02g0287 1239 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 843 914 IPR003594 -
Cam02g0287 1239 SMART HKATPase_4 746 919 IPR003594 -
Cam02g0287 1239 Pfam Response regulator receiver domain 1094 1178 IPR001789 GO:0000160(InterPro)
Cam02g0287 1239 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 620 700 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam02g0287 1239 SMART REC_2 1092 1226 IPR001789 GO:0000160(InterPro)
Cam02g0287 1239 FunFam Histidine kinase 4 353 580 - -
Cam02g0287 1239 CDD HisKA 634 695 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam02g0287 1239 Pfam CHASE domain 352 546 IPR006189 -
Cam02g0287 1239 PANTHER TWO-COMPONENT HISTIDINE KINASE 273 1229 IPR050956 -
Cam02g0287 1239 SMART HisKA_10 634 699 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam02g0287 1239 Gene3D - 300 352 - -
Cam02g0287 1239 ProSiteProfiles Response regulatory domain profile. 1093 1230 IPR001789 GO:0000160(InterPro)
Cam02g0287 1239 ProSiteProfiles Histidine kinase domain profile. 641 919 IPR005467 -
Cam02g0287 1239 Gene3D CHASE domain 353 580 IPR042240 -
Cam02g0287 1239 PRINTS Bacterial sensor protein C-terminal signature 879 897 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cam02g0287 1239 PRINTS Bacterial sensor protein C-terminal signature 903 916 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cam02g0287 1239 PRINTS Bacterial sensor protein C-terminal signature 862 872 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cam02g0287 1239 PRINTS Bacterial sensor protein C-terminal signature 844 858 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cam02g0287 1239 ProSiteProfiles Response regulatory domain profile. 943 1074 IPR001789 GO:0000160(InterPro)
Cam02g0287 1239 SUPERFAMILY CheY-like 1090 1230 IPR011006 -
Cam02g0287 1239 Coils Coil 611 631 - -
Cam02g0287 1239 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 688 914 IPR036890 -
Cam02g0287 1239 CDD REC_hyHK_CKI1_RcsC-like 1094 1226 - -
Cam02g0287 1239 CDD HATPase_EvgS-ArcB-TorS-like 751 917 - -
Cam02g0287 1239 Pfam His Kinase A (phospho-acceptor) domain 634 699 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam02g0287 1239 Gene3D - 698 919 IPR036890 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0287 Cam-Chr2:3642023 Cam10g0064 Cam-Chr10:2219943 1.20E-40 dispersed
Cam01g0683 Cam-Chr1:7571827 Cam02g0287 Cam-Chr2:3642023 6.40E-277 transposed
Cam02g1552 Cam-Chr2:28480805 Cam02g0287 Cam-Chr2:3642023 5.40E-30 transposed
Cam05g1764 Cam-Chr5:26355462 Cam02g0287 Cam-Chr2:3642023 9.70E-44 transposed
Cam06g0005 Cam-Chr6:1856743 Cam02g0287 Cam-Chr2:3642023 3.10E-306 transposed
Cam09g0552 Cam-Chr9:5508412 Cam02g0287 Cam-Chr2:3642023 2.60E-27 transposed
Cam11g0114 Cam-Chr11:2783103 Cam02g0287 Cam-Chr2:3642023 4.70E-280 transposed
Cam02g0287 Cam-Chr2:3642023 Cam02g0887 Cam-Chr2:12113436 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51431 PF03924 CHASE 2.90E-35 CL0165 Cam TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0287 K14489 - vvi:100263145 1541.94