Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam02g0314 | ATGGGTCTCTCCAGTCTCCCAGCTCCATCTGAAGGAGTTCTGAATGTGATTCTTGTAAACGCTGCACTATCCATTTCCATGTTCAAATGCATTGTTCGTTTGATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCATCATTAGTCCCATCAACAGATCCCTTTGAAAGTTCCTCAGAGTTGGGAGATTCCAATTTTGGCTCCTCTTGGAGTTACCTCGAGATGTTTCGAAACCGATATCCAAGGATCCGATTTGATAAATTACAGGGCTCAGAATGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCTGAGATAAATCACTTATCTTGTGGTCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTAGATTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATGTCCGAAGAAGAGAAATCGTGCTTTTGGTGA | 465 | 42.8 | MGLSSLPAPSEGVLNVILVNAALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDPFESSSELGDSNFGSSWSYLEMFRNRYPRIRFDKLQGSECREHDCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW | 154 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3885461 | 3885925 | - | CaPI482276_02g003140.1 | Cam02g0314 | 120056 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam02g0314 | 154 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 146 | IPR013083 | - | |
Cam02g0314 | 154 | PANTHER | - | 1 | 154 | IPR044249 | - | |
Cam02g0314 | 154 | ProSiteProfiles | Zinc finger RING-type profile. | 99 | 141 | IPR001841 | - | |
Cam02g0314 | 154 | Pfam | Ring finger domain | 98 | 141 | IPR001841 | - | |
Cam02g0314 | 154 | SUPERFAMILY | RING/U-box | 93 | 145 | - | - | |
Cam02g0314 | 154 | SMART | ring_2 | 99 | 140 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam02g0314 | Cam-Chr2:3885461 | Cam02g1133 | Cam-Chr2:21428507 | 3.00E-53 | dispersed | |
Cam02g0314 | Cam-Chr2:3885461 | Cam05g0169 | Cam-Chr5:1829935 | 1.60E-09 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam02g0314 | K16285 | - | csv:101215843 | 291.582 |