Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0314 ATGGGTCTCTCCAGTCTCCCAGCTCCATCTGAAGGAGTTCTGAATGTGATTCTTGTAAACGCTGCACTATCCATTTCCATGTTCAAATGCATTGTTCGTTTGATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCATCATTAGTCCCATCAACAGATCCCTTTGAAAGTTCCTCAGAGTTGGGAGATTCCAATTTTGGCTCCTCTTGGAGTTACCTCGAGATGTTTCGAAACCGATATCCAAGGATCCGATTTGATAAATTACAGGGCTCAGAATGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCTGAGATAAATCACTTATCTTGTGGTCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTAGATTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATGTCCGAAGAAGAGAAATCGTGCTTTTGGTGA 465 42.8 MGLSSLPAPSEGVLNVILVNAALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDPFESSSELGDSNFGSSWSYLEMFRNRYPRIRFDKLQGSECREHDCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3885461 3885925 - CaPI482276_02g003140.1 Cam02g0314 120056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0314 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 146 IPR013083 -
Cam02g0314 154 PANTHER - 1 154 IPR044249 -
Cam02g0314 154 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Cam02g0314 154 Pfam Ring finger domain 98 141 IPR001841 -
Cam02g0314 154 SUPERFAMILY RING/U-box 93 145 - -
Cam02g0314 154 SMART ring_2 99 140 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0314 Cam-Chr2:3885461 Cam02g1133 Cam-Chr2:21428507 3.00E-53 dispersed
Cam02g0314 Cam-Chr2:3885461 Cam05g0169 Cam-Chr5:1829935 1.60E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0314 K16285 - csv:101215843 291.582