Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0316 ATGGCAATTGGCAAAGCACATGCCAAACCCCTTTTACCGATCTCTGTGTTGTGTGTTCTGGAAGCTAAGTCTATTTATTGTCGCCATGGTCCTCATGGGTCAGAATTGATTGTTCACGAAAGTTTTCTTCTCTTCCTCTTTATTCTCATGCCGAATAGCTTATGTGGATTTGTTGAGGGGGAAATCATGGGGTTTTGGCAATCTAGAAGGATTTCTAAGGGAAAGTGTCAAAGATCTGGTTGCAGCATGGGTTACATTTGTGATTTCTGTGGGCAACAAAGGTCGATTGTGTACTGCCGATCCGATGCTGCAGCTTTGTGCTTGTCTTGTGACCGAAATGTTCACTCTGCCAACGCCTTGTCAAGGCGTCACTCAAGAACATTGTTATGTGATCGGTGCCATTCACAAGCAGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGACTATATGGGGCATAGCTCATCTGCCTCCATTTCGTCTCGAAAGAGGCAACCAATCAATTGTTACTCAGGCTGCCCGACAGCTGCAGAGCTCTCATCTATCTGGTCATTTGTTTTAGATCTCACTTCTGGAAGTGACGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCCGAAAATAGTGCAGTAAATGCTTGGGGCCCTGATGATAAAGCTGGTCAAAATGTATCTGGTGTAGATGAAACCAATGAATTCTCAAGTGTGGATAAATCAATTTGGTATGGGTCCTCTTCAATGCCTCACATTATGGACCAACCCATTACTAGAGATGCAACTTCACCCAAGTTGCACTATCCTGGAACAAAAGGTCCTGAACTCGAAATTGAAGATGACCTCTACGAGACTTTGAATATGGATGAAGATAGTTTGAATATTGAAAACTATGAAGAACTATTTGGTGTATCTCTCAGTTATTCTGAAGAACTGCTAGAGAATGGTGGTATTGATAGTTTGTTCAGGTTGAAGAGCTTATCTGCCGCTAAATCTGGTTGCCCTGGTGCGGCTGCTGCAGAGGGGGCGTCAGGCGGTTTTGTTAATAATGTGATGCAGCCTGCAAGCAGTAATGCAGCATCGGCAGATTCCGTGATGAGTTCGAAGACTGAACCGGTTCTTTGTTATAACAATAAGCAAGAGCACTCCAGCCTATCATTTTCTGGCATGACTGGAGAGAGTAGTGCAGGAGAACATCCAGACTGTGGAGCTTCATCAATGCTCCTAATGGGAGAACCTCCATGGTGTTCTATGACCACTGAGAGTTCCTTCCAGTCATCTAATCGTAGCGATGCTGTATTACGCTATAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTATGCCTCTCGCAAAGTTAGGGCCGATACTCGAAGACGTGTCAAGGGACGCTTTGTCAAAGCTGGAGAAGCTTATGACTATGATCCTTTGAGTCAAACCAGAAGCTACTGA 1470 43.81 MAIGKAHAKPLLPISVLCVLEAKSIYCRHGPHGSELIVHESFLLFLFILMPNSLCGFVEGEIMGFWQSRRISKGKCQRSGCSMGYICDFCGQQRSIVYCRSDAAALCLSCDRNVHSANALSRRHSRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCYSGCPTAAELSSIWSFVLDLTSGSDACEQELGLMSIAENSAVNAWGPDDKAGQNVSGVDETNEFSSVDKSIWYGSSSMPHIMDQPITRDATSPKLHYPGTKGPELEIEDDLYETLNMDEDSLNIENYEELFGVSLSYSEELLENGGIDSLFRLKSLSAAKSGCPGAAAAEGASGGFVNNVMQPASSNAASADSVMSSKTEPVLCYNNKQEHSSLSFSGMTGESSAGEHPDCGASSMLLMGEPPWCSMTTESSFQSSNRSDAVLRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPLSQTRSY 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3908578 3913606 - CaPI482276_02g003160.1 Cam02g0316 120058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0316 489 CDD Bbox1_BBX-like 86 129 IPR049808 -
Cam02g0316 489 SMART bboxneu5 82 129 IPR000315 GO:0008270(InterPro)
Cam02g0316 489 ProSiteProfiles CCT domain profile. 432 474 IPR010402 GO:0005515(InterPro)
Cam02g0316 489 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 84 479 - -
Cam02g0316 489 Pfam CCT motif 432 474 IPR010402 GO:0005515(InterPro)
Cam02g0316 489 ProSiteProfiles Zinc finger B-box type profile. 125 172 IPR000315 GO:0008270(InterPro)
Cam02g0316 489 ProSiteProfiles Zinc finger B-box type profile. 82 129 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0316 Cam-Chr2:3908578 Cam02g1134 Cam-Chr2:21558925 1.80E-123 dispersed
Cam11g1202 Cam-Chr11:23893948 Cam02g0316 Cam-Chr2:3908578 2.00E-06 dispersed
Cam02g0316 Cam-Chr2:3908578 Cam11g1260 Cam-Chr11:25068917 1.60E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51434 PF06203 CCT 8.00E-16 CL0281 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0316 - - - 0.0