Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0331 ATGGATAATGAGGTGATTGAATTTGATATTGGATTGGGAGGAGGGAGTGGGAGGGAGGGAGATGACTACTCTATGGGTATTGTGCATCATTCCATTGAGGATGAGGAAATGGTTGATAGCCCTCCTCTCAGCAGTCTTGGTGGTGGTGCTGGCAGTGGTGAGATATATCTTCCTGAGGGTGATCTTTTGGATCTTGAACCTTATGATGGAATGGAATTTGAGTCTGAAGAAGCTGCCAAGGCTTTCTATAATTCATATGCTCGGCGTGTTGGGTTTAGTACTCGTGTCAGCTCCTCCCGTCGGTCTAGGCGTGATGGAGCGATTATACAAAGGCAATTTGTTTGTGCCAAAGAGGGTTTTAGGAATATGAATGAGAAGCGAACTAAAGACCGAGAAATTAAGCGTCCTCGAACCATCACAAGAGTAGGTTGCAAAGCATCCTTGTCTGTAAAGATGCATGATTCTGGGAAATGGGTTGTATCTGGATTTGTTAGAGAGCATAATCATGAGTTAGTTCCTCCTGACCAGGTGCACTGCTTGCGGTCTCATAGGCAAATATCAGGTCCAGCAAAGACCTTAATTGATACTTTACAGGCTGCTGGGATGGGTCCTCGTAGGATTATGTCGGCACTGATAAAGGAGTATGGAGGAATCAGTAAAGTTGGATTTACAGAGGTGGATTGTCGAAATTATATGAGGAATAATCGCCAAAGGAGCTTAGAAGGAGACATTCAACTGCTTTTGGATTACTTGAGGCAAATGCATTCTGAAAATCCTAACTTCTTCTATGCTGTTCAGGGTGAGGAGGATCAGTGTGTGGGCAATGTCTTTTGGGCCGATCCAAAAGCTCGAATGAACTATACTTACTTTGGTGATACTGTTACATTTGACACTACCTATAGGTCAAACAGATATCGTCTGCCCTTTGCTCCGTTCACTGGGGTGAATCACCATGGACAGCCGGTTTTGTTTGGTTGTGCTTTTCTGATAAATGAATCCGAAGCGTCATTTAATTGGCTATTTAGAACATGGCTTTTGGCAATGTCTGGTCGCCCACCTGTATCAATTACTACTGATCACGATGCAGTAATACAGTCAGCCATCACACAAGTTTTCCCTGAGACCCGTCACCGTTTCTGCAAATGGCATATTTTCAAGAAATGCCAGGAGATGCTGTCTCATGTGTTTCTTAAACACCCAAGCTTTGAAGCTGACTTCCACAAATGTGTAAACTTGACTGACTCTATCGAGGAATTTGAGTCCTGCTGGCTGTCACTTGTTGACAGATACGATCTCAGGGATCATGAGTGGCTTCAGACAATTTACTCTGCTCGGAGGCAGTGGGTTCCTGTATATTTGCGGGACACTTTTTTTGCCGAAATGTCGATTACACAGCGAAGTGATAGCATGAATTCTTATTTTGATGGATATGTGAATGCTTCGACCAATTTGAGTCAGTTCTTTAAACTGTATGAAAAAGCTTTAGAGAGTCGGAATGAGAAGGAAGTGAAAGCAGATTATGATACGATGAACACTTCCCCTGTTCTAAAGACTCCATCTCCAATGGAAAAACAGGTTTCTGAGCTTTACACCAGGAAGCTGTTCTCAAGGTTCCAAGAGGAGTTAGTTGGCACACTAACTTTTATGGCTTCGAAAGCTGATGATGATGGGGAAATTATAACATATCAAGTGGCCAAATTTGGAGAGGATCATAAAGCTCACTATGTGAAATTTAATGTTTTGGAGATGAGAGCAAGTTGTAGTTGCCAGATGTTTGAGTTCTCAGGTCTTCTGTGCAGACATATCTTGGCTGTCTTCAGAGTGACCAATGTTCTTACACTTCCATCTTACTACATATTGAAACGATGGACAAGAAACGCAAAAAGTAATGTGATATTGGAGGACCATGTGAATGATATCTATAACAACTATCTTGAATCTCATACTGTGAGATACAATACCCTGCGCCACGAGGCTTTTAAATTTATAGAGGAAGGAGCAAAGACTCTGGATATGTATAATGTGGCTAAACATGCCCTTCAGGAGGCTGCTAAAAGGGTTGCTCATACGACGAGGAATGATGGCAAAATTTCTACAATCAATGGGCGAATTAAAGTGGACCCTGTAAATGTCAGAAGCTATAAAAATCACAGTGGTAGCAGGGATCATGACGAGAGCTTGAGTAAAAACATGTCTGAGGATGACTTGGACAAGAAAATCAATGAACTTACTAATGAATTGGCGTGTGCGAATCGGAAGTGTGAAGTTTATCGGTCTAATCTTTTTTCAGTGCTGAAAGACATTGAGGACCACAAGTTGCAATTATCTATAAAAGTGCAGAACATAAAAATTAGTATGAAAGACAGCATTTGA 2373 41.85 MDNEVIEFDIGLGGGSGREGDDYSMGIVHHSIEDEEMVDSPPLSSLGGGAGSGEIYLPEGDLLDLEPYDGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRTKDREIKRPRTITRVGCKASLSVKMHDSGKWVVSGFVREHNHELVPPDQVHCLRSHRQISGPAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLLLDYLRQMHSENPNFFYAVQGEEDQCVGNVFWADPKARMNYTYFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFNWLFRTWLLAMSGRPPVSITTDHDAVIQSAITQVFPETRHRFCKWHIFKKCQEMLSHVFLKHPSFEADFHKCVNLTDSIEEFESCWLSLVDRYDLRDHEWLQTIYSARRQWVPVYLRDTFFAEMSITQRSDSMNSYFDGYVNASTNLSQFFKLYEKALESRNEKEVKADYDTMNTSPVLKTPSPMEKQVSELYTRKLFSRFQEELVGTLTFMASKADDDGEIITYQVAKFGEDHKAHYVKFNVLEMRASCSCQMFEFSGLLCRHILAVFRVTNVLTLPSYYILKRWTRNAKSNVILEDHVNDIYNNYLESHTVRYNTLRHEAFKFIEEGAKTLDMYNVAKHALQEAAKRVAHTTRNDGKISTINGRIKVDPVNVRSYKNHSGSRDHDESLSKNMSEDDLDKKINELTNELACANRKCEVYRSNLFSVLKDIEDHKLQLSIKVQNIKISMKDSI 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4048770 4051982 - CaPI482276_02g003310.1 Cam02g0331 120073

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0331 790 Coils Coil 733 760 - -
Cam02g0331 790 SMART 26again6 585 612 IPR006564 GO:0008270(InterPro)
Cam02g0331 790 MobiDBLite consensus disorder prediction 716 733 - -
Cam02g0331 790 MobiDBLite consensus disorder prediction 713 733 - -
Cam02g0331 790 ProSiteProfiles Zinc finger SWIM-type profile. 578 610 IPR007527 GO:0008270(InterPro)
Cam02g0331 790 Pfam MULE transposase domain 294 387 IPR018289 -
Cam02g0331 790 Pfam SWIM zinc finger 582 607 IPR007527 GO:0008270(InterPro)
Cam02g0331 790 Pfam FAR1 DNA-binding domain 82 173 IPR004330 -
Cam02g0331 790 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 66 689 IPR031052 GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0331 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0331 Cam-Chr2:4048770 Cam07g1461 Cam-Chr7:29261145 6.80E-141 dispersed
Cam01g2645 Cam-Chr1:37950883 Cam02g0331 Cam-Chr2:4048770 9.70E-124 transposed
Cam03g0427 Cam-Chr3:5284350 Cam02g0331 Cam-Chr2:4048770 2.70E-127 transposed
Cam03g1440 Cam-Chr3:29282195 Cam02g0331 Cam-Chr2:4048770 5.70E-181 transposed
Cam05g0649 Cam-Chr5:5625437 Cam02g0331 Cam-Chr2:4048770 3.40E-111 transposed
Cam07g1681 Cam-Chr7:31490400 Cam02g0331 Cam-Chr2:4048770 2.00E-26 transposed
Cam09g0758 Cam-Chr9:7735494 Cam02g0331 Cam-Chr2:4048770 3.00E-22 transposed
Cam09g0790 Cam-Chr9:8031844 Cam02g0331 Cam-Chr2:4048770 1.70E-29 transposed
Cam10g1688 Cam-Chr10:30867481 Cam02g0331 Cam-Chr2:4048770 6.20E-28 transposed
Cam11g1707 Cam-Chr11:29751176 Cam02g0331 Cam-Chr2:4048770 1.10E-117 transposed
Cam02g0331 Cam-Chr2:4048770 Cam02g1123 Cam-Chr2:21014384 1.50E-188 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g320 . . . . . . . . . . . Cma20g00708 . Car20g00607 . . . . . . . . . . Cla02g00322 Cam02g0331 Cec02g0331 Cco02g0335 Clacu02g0321 Cmu02g0320 Cre02g0653 . . Cone3ag1258 . . . . . . . . . . . . . . . Cmo20g00702 . . Car11g01433 . Cpe16g00358 . . . . . . . . Cla02g01052 Cam02g1123 Cec02g1127 Cco02g1163 Clacu02g1110 Cmu02g1074 Cre02g1378 Lsi11g01315 . . Cme11g01021
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51436 PF10551 MULE 3.70E-29 CL0219 Cam TF