Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam02g0338 | ATGGCAAGCTTCACGGTAGGTTGTTGGGCATTCGGTTCTTCGTGGGGTAGTGGTTGCTATCAAGCTAAACGTAGACGCTTTGTGCATATCAACAATCGTTGTCTTTTGAATTTGGAGGGCTTCTTCAAGGCTTTATGTTCTTCTGAAATGGCTGCCTTTGTAGCTATAATAGTCTTCTATTTGGTTCTTCTGCAAACACCCACCAACATATTTGCGGTTAAGGATGAAGAAGAGTGGAAATCTGCTACTGCAACGTACTCCAAAGAAACAGATGGGTCAATTGTTACAGAAGGTGCTTGTGGTTATGGAGATCTGCATAAGATAAGCTATGGAAAATATAGCGCTGGACTGAGTAGCATGCTGTTTAATAGAGGGAGTACCTGTGGAGCTTGCTATGAGCTTAGATGTGTTGACCACATCTTGTGGTGCTTGCAAGGAAGCCCGACTGTCATTCTAACGGCCACCGACTTCTGTCCTCCCAATTACGGCTTCTCTTCCGATTATGGTGGTTGGTGTAATTTTCCCAAGGAACACTTTGAGATGTCAGAGGCAGCGTTTGCTGAAATAGCAGAGAAAAAAGCAGATATTGTGCCAGTTCAATATAGGAGGGTGAGGTGTGACAGAAGTGGTGGAATGAGATTCACAGTTAGTGGGAATTCTCGTTTCTTTCAAGTGCTGATTACAAATGTTGGAATGGATGGTGAATTAGTGGCAGTCAAAGTAAAAGGATCAAGAACAGGATGGATACCACTGGCAAGAAACTGGGGACAAAACTGGCAAAGCAATGTCAATCTTCATGGACAACCTCTCTCTTTTGAAGTTACCTCCAGCAGTGGAAGAGCACTTACTTCCTACAGTGTTGCACCTGGAAACTGGCAGTTTGGGCAGACATTTGAAGGGAAACAATTTTGA | 912 | 43.75 | MASFTVGCWAFGSSWGSGCYQAKRRRFVHINNRCLLNLEGFFKALCSSEMAAFVAIIVFYLVLLQTPTNIFAVKDEEEWKSATATYSKETDGSIVTEGACGYGDLHKISYGKYSAGLSSMLFNRGSTCGACYELRCVDHILWCLQGSPTVILTATDFCPPNYGFSSDYGGWCNFPKEHFEMSEAAFAEIAEKKADIVPVQYRRVRCDRSGGMRFTVSGNSRFFQVLITNVGMDGELVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYSVAPGNWQFGQTFEGKQF | 303 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4137936 | 4142455 | - | CaPI482276_02g003380.1 | Cam02g0338 | 120080 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam02g0338 | 303 | PRINTS | Expansin signature | 109 | 123 | IPR002963 | GO:0009664(InterPro) | |
Cam02g0338 | 303 | PRINTS | Expansin signature | 210 | 222 | IPR002963 | GO:0009664(InterPro) | |
Cam02g0338 | 303 | PRINTS | Expansin signature | 186 | 199 | IPR002963 | GO:0009664(InterPro) | |
Cam02g0338 | 303 | PRINTS | Expansin signature | 257 | 278 | IPR002963 | GO:0009664(InterPro) | |
Cam02g0338 | 303 | PRINTS | Expansin signature | 136 | 147 | IPR002963 | GO:0009664(InterPro) | |
Cam02g0338 | 303 | PRINTS | Expansin signature | 169 | 186 | IPR002963 | GO:0009664(InterPro) | |
Cam02g0338 | 303 | PRINTS | Expansin signature | 222 | 243 | IPR002963 | GO:0009664(InterPro) | |
Cam02g0338 | 303 | PRINTS | Expansin signature | 150 | 160 | IPR002963 | GO:0009664(InterPro) | |
Cam02g0338 | 303 | PRINTS | Expansin signature | 286 | 302 | IPR002963 | GO:0009664(InterPro) | |
Cam02g0338 | 303 | SUPERFAMILY | PHL pollen allergen | 208 | 300 | IPR036749 | - | |
Cam02g0338 | 303 | SMART | dpbb_1 | 114 | 201 | IPR007112 | - | |
Cam02g0338 | 303 | Pfam | Lytic transglycolase | 115 | 201 | IPR009009 | - | |
Cam02g0338 | 303 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 221 | 300 | IPR007117 | - | |
Cam02g0338 | 303 | PRINTS | Expansin/Lol pI family signature | 286 | 300 | IPR007118 | GO:0005576(InterPro) | |
Cam02g0338 | 303 | PRINTS | Expansin/Lol pI family signature | 96 | 114 | IPR007118 | GO:0005576(InterPro) | |
Cam02g0338 | 303 | PRINTS | Expansin/Lol pI family signature | 194 | 210 | IPR007118 | GO:0005576(InterPro) | |
Cam02g0338 | 303 | PRINTS | Expansin/Lol pI family signature | 78 | 93 | IPR007118 | GO:0005576(InterPro) | |
Cam02g0338 | 303 | PRINTS | Expansin/Lol pI family signature | 118 | 136 | IPR007118 | GO:0005576(InterPro) | |
Cam02g0338 | 303 | PRINTS | Expansin/Lol pI family signature | 248 | 262 | IPR007118 | GO:0005576(InterPro) | |
Cam02g0338 | 303 | PANTHER | EXPANSIN-A15 | 54 | 303 | IPR002963 | GO:0009664(InterPro) | |
Cam02g0338 | 303 | CDD | DPBB_EXPA_N | 78 | 206 | - | - | |
Cam02g0338 | 303 | Pfam | Expansin C-terminal domain | 212 | 289 | IPR007117 | - | |
Cam02g0338 | 303 | Gene3D | - | 65 | 207 | IPR036908 | - | |
Cam02g0338 | 303 | Gene3D | - | 208 | 303 | IPR036749 | - | |
Cam02g0338 | 303 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 97 | 211 | IPR007112 | - | |
Cam02g0338 | 303 | SUPERFAMILY | Barwin-like endoglucanases | 78 | 229 | IPR036908 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam02g0338 | Cam-Chr2:4137936 | Cam02g2077 | Cam-Chr2:33675434 | 2.30E-73 | dispersed | |
Cam02g0338 | Cam-Chr2:4137936 | Cam03g0142 | Cam-Chr3:2342561 | 1.40E-73 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam02g0338 | - | - | - | 0.0 |