Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0349 ATGCCATTTCAGGTGCTTCACTCCCAACAAGTCCTTGATAGATTTCGAGTCGGGAATAGAGCTGTGGCTTATTCGGCGCTATATCACAATTCATTCATTTTCGGGCATAGCAGTTCACGAAACGTGGCAGAGCGGTCAACATTGCTTCAAGTGGAGCTGGCAAATCCTGTTTATGCCCCAAAGAGGGTGACCTTTGGGATTGGATATGGCAATATGAAGAAATTTCCCACTTGGTTTGAAGTCCTTGTGAAAGCATTTGTTGCTCAATATATGCTTCTTGTTATTAAAATACTTGTTTGTATTCAAGGAATTTCAGAAGGGGCCTCAAGAAATGAAGTAGTGAAAGTTGGAGCTATATTTTCACTTAGTTCTGTCAATGGGAAAGTTTCCAAGCTTGCCATTGAAGCTGCTGAGAAAGATGTGAATTCTGATCCAAGTGTTCTCGGTGGAAGAAAGCTATCTATTTCCATATATGATGCAAATTATAGTGGATTTCTTGGTATCACAGGAGCAATGAAGTACATGGTGTCTGACACAGTTGCTATCCTTGGTCCACAAGATTCTACAATGGCTCATACACTCTCACATCTTTCTAATGAACTCCATATCCCGTTACTCTCATTTACAGCATTGGACCCAACACTTTCAACTTTGCAATATCCATACTTCATTCAAACAGCTCCAAATGATCAATTCCAAATGACTGCAATTGCTGATATGATTCATTATTACGGTTGGCATGACGTCGTTGTGGTTTTCACCGACGACGATCAATGTCGAAACAGTATGATTGAATTAGGTGATAAACTTGAAGAGAGAAGCTTGAAAATTTCCTCTAAAGTGCCACTCCCCCCTTACCCAACAGCAACAAGAACTCAAGTTCAAGATGCATTGGTAAAGATCAAAATGATGGAATCTCGAGTAATCGTATTGTACACATTTTCGAAAACCGGTTTCTTGGTTTTCGAAGTGGCTCAAAGCCTTAGAATGATGGGAGCTGGTTATGTTTGGATAACCTCTAGTTGGCTATCAACAGTAATAGATTCTACTTCACCACTTCCTTTGAAAATTGCCAACTCCATCCAAGGAGTTCTTACGCTTCGTCTACACACGCCCGATTCGAAAATGAAACGATCTTTTATATCGAGATGGAACAAGCTGAGTAATGGCTCCTCAATTGGGTTGAATACGTATGGCCTATATGCTTATGATACTGTTTGGATGGTTGCAAGAGGAGTGAAAAAGTTATTGGATCAAAATGGAACTATCTCATTCTCCAAAGTTACAAATGCTGGTAATCTTAGTGGAGAGACTTTGGATTTTAGTTCATTGGGAATCTTTAATGAAGGAAATGATTTGCTTAATTATTTATTGAATATCAGTATGACTGGTTTAACAGGGCCTATTAAGTTTCTAGATAAATCCCCTTTACATCCTTCATATGATATCTTAAATGTAGTGAAATCTGGTATGAAGAGAATCGGATATTGGTCTAACTATTCCGGTTTGTCTGTCGTGGCGCCCGAAACGTTGTATGGCAAAGCAATTAATCGTTCTATGTTAACCGAACAGTTAAGCAGCACAATGTGGCCTGGGGGATTGACAACAAAGCCTCGTGGTTGGGTTCTACCGCTCGATGGAAGGCGGCTAAGAATCGGCGTTCCACGCAGAGTTAGTTATCAGGAATTCGTGACACCGGGAAATGGAAATGGTACAATCAAAGGATACTGCATTGATGTGTTCACTGCTGCTGTCAACTTGCTTCCATATGCAGTTACTTATGAGTTCATTTTGTTTGGAGATGGTGAGAAGAATCCTAGCTACCTTGAGCTTGTAAATAAAGTTGCATTGAAAGAATTTGATGCTGCTGTTGGTGACATTGCTATTGTGACTAGTCGGACAAGGATCGTCGATTTTACGCAGCCTTATATCGACTCGGGGCTAGTAGTTCTGGCCCCTGCGAAGAAGTTGAATTCAAGTCCTTTGGCATTCCTTCGCCCATTCACACCAATGATGTGGGCTGTCACAGCAGCATTTTTCTTCCTCATTGGATTAGTTGTGTGGATGTTGGAACATCGGAAAAACGACGAATTTCGAGGGCATCCTAGGACGCAAATTGTCACAATCCTCTGGTTTGGCTTCTCTACTATGTTTTTTGCACAAAGAGAAAACGTCGTGAGCACGCTCGGTCGTTTCGTGATAGTCGTGTGGCTTTTTGTGGTTCTAATTATCAACTCGAGCTACACCGCTAACCTGACATCGATATTCACAGTACAACTAGCCACCTCATCTATCACAGGAATCGATTCATTGATATCTAGCAATGTGCATATAGGATTCCAAGTTGGTTCATTTGCTGAAAGTTATTTAAGTGAGCAACTTAATGTCCAAAAGTCTAGGCTCATTGCTCTTGGATCCCCAGAAGAGTATGCTGCCGCTCTCAAGAACGGAACGGTCGGTGCTATTGTCGACGAGCAACCATACATCGATCTCTTTCTCACCGAGTATTGCGATTATTTGATAAGGGGCCAACAGTTCACCAAAAGTGGATGGGGATTTGCATTTCCACGAGACTCTCCATTGGCGGTAGACTTATCGACCGCCATACTCACACTCTCAGAGAACGGCCATCTTCAGAAGATTCACGACAAGTGGTTCTCAAGAAAATCTTGCAGTTCAGGAGATTCCGATCTAAATTCAGAGCAACTTCACTTGCAGAGCTTCATCGGATTGTTCTCCATTTGTGCCGGCGTGTGTTTGTTCGCTCTTTTGCTTCATTTTTTCTTGACCATGTGTCAATTCAACCGCCATTTGAAGCAAGATCCAGAAGCTTCGACCACCGGTACCGGTGGCGATGGCGGTGGCGGTGGCGGTTCCTGCCCTACGGCGCTGCGAAATTTCTTTTCGTTTGCAGATAAGAAGAAGGAAAGAAAGACGAGCTATTCGAAGAGGAAGGTCGAAGATACATTCTCGAGTGAACGTGGAGAGGATTAG 2994 42.38 MPFQVLHSQQVLDRFRVGNRAVAYSALYHNSFIFGHSSSRNVAERSTLLQVELANPVYAPKRVTFGIGYGNMKKFPTWFEVLVKAFVAQYMLLVIKILVCIQGISEGASRNEVVKVGAIFSLSSVNGKVSKLAIEAAEKDVNSDPSVLGGRKLSISIYDANYSGFLGITGAMKYMVSDTVAILGPQDSTMAHTLSHLSNELHIPLLSFTALDPTLSTLQYPYFIQTAPNDQFQMTAIADMIHYYGWHDVVVVFTDDDQCRNSMIELGDKLEERSLKISSKVPLPPYPTATRTQVQDALVKIKMMESRVIVLYTFSKTGFLVFEVAQSLRMMGAGYVWITSSWLSTVIDSTSPLPLKIANSIQGVLTLRLHTPDSKMKRSFISRWNKLSNGSSIGLNTYGLYAYDTVWMVARGVKKLLDQNGTISFSKVTNAGNLSGETLDFSSLGIFNEGNDLLNYLLNISMTGLTGPIKFLDKSPLHPSYDILNVVKSGMKRIGYWSNYSGLSVVAPETLYGKAINRSMLTEQLSSTMWPGGLTTKPRGWVLPLDGRRLRIGVPRRVSYQEFVTPGNGNGTIKGYCIDVFTAAVNLLPYAVTYEFILFGDGEKNPSYLELVNKVALKEFDAAVGDIAIVTSRTRIVDFTQPYIDSGLVVLAPAKKLNSSPLAFLRPFTPMMWAVTAAFFFLIGLVVWMLEHRKNDEFRGHPRTQIVTILWFGFSTMFFAQRENVVSTLGRFVIVVWLFVVLIINSSYTANLTSIFTVQLATSSITGIDSLISSNVHIGFQVGSFAESYLSEQLNVQKSRLIALGSPEEYAAALKNGTVGAIVDEQPYIDLFLTEYCDYLIRGQQFTKSGWGFAFPRDSPLAVDLSTAILTLSENGHLQKIHDKWFSRKSCSSGDSDLNSEQLHLQSFIGLFSICAGVCLFALLLHFFLTMCQFNRHLKQDPEASTTGTGGDGGGGGGSCPTALRNFFSFADKKKERKTSYSKRKVEDTFSSERGED 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4228270 4238075 - CaPI482276_02g003490.1 Cam02g0349 120091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0349 997 PIRSF IGluLR_plant 83 991 IPR017103 -
Cam02g0349 997 Gene3D - 661 802 - -
Cam02g0349 997 FunFam Glutamate receptor 229 387 - -
Cam02g0349 997 Pfam Bacterial extracellular solute-binding proteins, family 3 560 671 IPR001638 -
Cam02g0349 997 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 114 979 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cam02g0349 997 Gene3D - 229 503 - -
Cam02g0349 997 Pfam Ligand-gated ion channel 888 918 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cam02g0349 997 SMART GluR_14 551 888 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cam02g0349 997 FunFam Glutamate receptor 661 791 - -
Cam02g0349 997 Gene3D - 544 660 - -
Cam02g0349 997 SUPERFAMILY Periplasmic binding protein-like II 526 888 - -
Cam02g0349 997 FunFam Glutamate receptor 545 661 - -
Cam02g0349 997 FunFam Glutamate receptor 787 890 - -
Cam02g0349 997 Gene3D - 132 478 - -
Cam02g0349 997 MobiDBLite consensus disorder prediction 974 997 - -
Cam02g0349 997 SUPERFAMILY Periplasmic binding protein-like I 108 541 IPR028082 -
Cam02g0349 997 CDD GluR_Plant 548 886 - -
Cam02g0349 997 Gene3D - 828 893 - -
Cam02g0349 997 Pfam Receptor family ligand binding region 131 488 IPR001828 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0349 Cam-Chr2:4228270 Cam11g1903 Cam-Chr11:31544418 2.60E-275 dispersed
Cam01g2149 Cam-Chr1:34262611 Cam02g0349 Cam-Chr2:4228270 8.40E-281 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0349 K05387 - csv:101208602 1556.96