Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0356 ATGGGTAAGGTAGTGGAGAGGAAGAAGAGGAAGAAAGGGCGGCCATCGCTGTTGGATCTTCAAAAGCGGAATCTCAAGGAGCAGCAAGAGCAAGAACAGCAAGACCAGAAGCAAAAACAAAACCACCAAACCAAACGAATCAACAACTCCACCACAATTTCCAACCCTAATTACGCTTCCCCAACTCCCTTGCGGCGATCTACTCGCCGGAATCCCAACACCGACGAACTCACTCCCGATGAGGTCGCTGATGACCACGAGGATGCTGAATACAACGAAGAATTGGCTGGGAACGGCCGCGAGAAAAAACTCAAGCTCGTCCTTAGATTGCACTCCCAGAAATCCCCAGTCAATTCCTCGTCTCTCAATTCTTGTGGTTCCGATTCTAATGCGGAGGGAGATGGTAATGCTGCCTCGATTAACAAGAAGCGGAAGATCGGTTCGATTGGGGAGGGATCTAGGATCCAAGACTCCGAGAAGGGTGAAAAGTCCATTTCTGCTACAAACCCATCAGAAACCCTTCAAGGGGTGCATATGGATTCGGGACCCTCGACGCCTTTACCAGATAAGAAGCTTTTAGTCTTCATCCTCGACAGGCTTCAAAAGAAGGACGTCTATGGTGTGTTTTCCGAACCAGTGGACCCCAACGAGCTTCCAGACTATCACGAAATTATAGATCATCCGATGGATTTTGGAACTGTACGGGAGAAGCTTACTTCTGGAGCTTATAGCACCTTGGAACAGTTTGAAAAAGATGTCCTCTTAATCAGTTCGAATGCAATGCAATATAATTCCCCAGATACTATATATTTTCGGCAGGCACGTACCATACAAGAATTAGCAAAAAAGAATTTTAAGAACTTGAGACAAGATAGTGATGATAATGAACCAGAACCTAAAGTGGTGAGAAGGGGTAGACCGCCGACCAAGAATTTAAAAAAACCATTAGGTAGACCCTCCTTGGAACGCGCTGGTTCAGAGTTTTCCCCAGATGCCACTCTTGCTACTGGTGGTGAAAACACAAATCGGTCCAGTGATTTGAGGAAAGGACTTCATAATTTGGAAAAACCTAGTTTTGCTGATTTTTCTGGCAGATTCTCCTTTTCTTCTAATAGTGATGCTGCATTTAATTTGTTTAACCAGAGCAGATTTGATAGAAGCGAGGATATTACAGGTTCTGCGCTGAGATTTAATTCCGTGAGACAGGGGAAAAAACCTATTGTCTCCGAGGAGAATAGGCGAAATACATATAAGCAATTTCAAGAGGCAGCTGCTTTGCTAGAACCCTCTGTGTTGAATACATTTGATAGAGAGAGGAAGGTTTTAATGCCAGTTGGACTTTTCTTGGAGCATGCTTATGCACGAAGCCTCGCTCGATTTGCTGCAGATCTTGGATCTGTAGCTTGGACAGTTGCTTCTAAGAAGATTGAAAGATCTTTGCCTTCAGGTTCAAGTTTTGGTCCTGGATGGGTTGTAGAAAATGATACCACACCAAAGAGGGTGTTTCTACCACAAGCTGAGCTTTGTCAAATGTCGACGTTGCAGCCCTTTCTTGGGCATGAAAGTTCGGATCCAGATGTAAAGCCTCTTACTCCTGAACAAAAGGGGGTTCGATCATCTGATAACTCTGAAGCTGATACATCATCCAAGACGCATGACGAGCCTTCTCGTGCCCCCAGTTCAGATGGCCAGATAAACAGGCCTCCCACTGAGTTTGCTGCAGCTTCGTCACCACCATCAAGTACTCGACGATCTTCTGAGCCGTGCAAGGGACAGGCGGAAACAGTTGAAGGATCAAATCCCAGTAGTGATTATAATGTATTGGAAAGTAGTATTCCAATCTCAAGGCCTTCATTCCAGAAACACCATCCTACAATCCGCCCTGGTATGAATGGATTCAATGGTGCTTATGGTTTTGATCCCTCTGCTCACAGGGGGAAACTAATCGGACCGTCTGAGCCTGCTGGTGTAAAGCCTCAGTCATCTCAAATGCTTGAGATGATCTCCAGGACCAATGCTAATTTCATCCTTCCAGCAACAACGACCAGCCTGAATCTGAAAGAACTGAAATGTCCCGAAAACAATCCTAGCACAACAAACTCTTCCAGTTCATTGGTTGGGTCGGAGAATGACGCTCTTGTCAACCCAGCAACTGGTCCGCATTCACGAACATATTGGCAGCAGGGGCCATCACCACCAGAGAAAACAGATGCAGTAGTAACAACAATATACAAACCAGAATCGGTTCCCCCGGACCTGAATGTGAGATTTAAATCTCCAGGATCTCCTAGCTCTAGTAAGGTGGACTCTGCTCACCCTGATTTGGTTTTACAGCTCTGA 2340 45.68 MGKVVERKKRKKGRPSLLDLQKRNLKEQQEQEQQDQKQKQNHQTKRINNSTTISNPNYASPTPLRRSTRRNPNTDELTPDEVADDHEDAEYNEELAGNGREKKLKLVLRLHSQKSPVNSSSLNSCGSDSNAEGDGNAASINKKRKIGSIGEGSRIQDSEKGEKSISATNPSETLQGVHMDSGPSTPLPDKKLLVFILDRLQKKDVYGVFSEPVDPNELPDYHEIIDHPMDFGTVREKLTSGAYSTLEQFEKDVLLISSNAMQYNSPDTIYFRQARTIQELAKKNFKNLRQDSDDNEPEPKVVRRGRPPTKNLKKPLGRPSLERAGSEFSPDATLATGGENTNRSSDLRKGLHNLEKPSFADFSGRFSFSSNSDAAFNLFNQSRFDRSEDITGSALRFNSVRQGKKPIVSEENRRNTYKQFQEAAALLEPSVLNTFDRERKVLMPVGLFLEHAYARSLARFAADLGSVAWTVASKKIERSLPSGSSFGPGWVVENDTTPKRVFLPQAELCQMSTLQPFLGHESSDPDVKPLTPEQKGVRSSDNSEADTSSKTHDEPSRAPSSDGQINRPPTEFAAASSPPSSTRRSSEPCKGQAETVEGSNPSSDYNVLESSIPISRPSFQKHHPTIRPGMNGFNGAYGFDPSAHRGKLIGPSEPAGVKPQSSQMLEMISRTNANFILPATTTSLNLKELKCPENNPSTTNSSSSLVGSENDALVNPATGPHSRTYWQQGPSPPEKTDAVVTTIYKPESVPPDLNVRFKSPGSPSSSKVDSAHPDLVLQL 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4313985 4318665 + CaPI482276_02g003560.1 Cam02g0356 120098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0356 779 CDD Bromodomain 189 283 - -
Cam02g0356 779 ProSitePatterns Bromodomain signature. 207 263 IPR018359 -
Cam02g0356 779 MobiDBLite consensus disorder prediction 17 42 - -
Cam02g0356 779 MobiDBLite consensus disorder prediction 1 16 - -
Cam02g0356 779 Coils Coil 18 45 - -
Cam02g0356 779 MobiDBLite consensus disorder prediction 517 638 - -
Cam02g0356 779 MobiDBLite consensus disorder prediction 558 618 - -
Cam02g0356 779 PANTHER BROMODOMAIN CONTAINING PROTEIN 7 778 IPR051831 -
Cam02g0356 779 MobiDBLite consensus disorder prediction 286 348 - -
Cam02g0356 779 Gene3D - 187 304 IPR036427 GO:0005515(InterPro)
Cam02g0356 779 Pfam Bromodomain 196 275 IPR001487 GO:0005515(InterPro)
Cam02g0356 779 MobiDBLite consensus disorder prediction 689 735 - -
Cam02g0356 779 MobiDBLite consensus disorder prediction 1 101 - -
Cam02g0356 779 SMART bromo_6 182 290 IPR001487 GO:0005515(InterPro)
Cam02g0356 779 MobiDBLite consensus disorder prediction 113 136 - -
Cam02g0356 779 MobiDBLite consensus disorder prediction 689 779 - -
Cam02g0356 779 SUPERFAMILY Bromodomain 182 294 IPR036427 GO:0005515(InterPro)
Cam02g0356 779 MobiDBLite consensus disorder prediction 113 185 - -
Cam02g0356 779 MobiDBLite consensus disorder prediction 43 68 - -
Cam02g0356 779 MobiDBLite consensus disorder prediction 147 161 - -
Cam02g0356 779 MobiDBLite consensus disorder prediction 286 305 - -
Cam02g0356 779 PRINTS Bromodomain signature 252 271 IPR001487 GO:0005515(InterPro)
Cam02g0356 779 PRINTS Bromodomain signature 204 217 IPR001487 GO:0005515(InterPro)
Cam02g0356 779 PRINTS Bromodomain signature 234 252 IPR001487 GO:0005515(InterPro)
Cam02g0356 779 PRINTS Bromodomain signature 218 234 IPR001487 GO:0005515(InterPro)
Cam02g0356 779 ProSiteProfiles Bromodomain profile. 201 271 IPR001487 GO:0005515(InterPro)
Cam02g0356 779 MobiDBLite consensus disorder prediction 162 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0356 K22184 - - csv:101218234 1288.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0356 Cam-Chr2:4313985 Cam11g1894 Cam-Chr11:31484078 5.00E-80 dispersed
Cam02g0356 Cam-Chr2:4313985 Cam05g1466 Cam-Chr5:18039776 1.70E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g294 . . . . . Bpe12g00149 . . Cmo19g00818 Cmo11g01786 . . . . . Cpe04g00631 Cpe15g00642 Bhi05g01248 Tan02g0781 . . . . . Cla02g00347 Cam02g0356 Cec02g0357 Cco02g0363 Clacu02g0348 Cmu02g0345 Cre02g0677 . . . . . Csa07g00186 . Cme01g01147 Blo04g00606 Blo13g00473 . Bda14g00648 Bpe15g00784 . Bma03g00637 Bma08g00717 . . . Cma11g01333 Cma19g00798 Car11g01413 Car19g00614 . . . . . . . . . . . . . . . . Lsi11g01285 . Chy01g00594 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005813 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 39