Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0374 ATGCCTTTCTTCCTCCCTCTTCTCTTCCTCTCACTCTTCTCTTCTGCCTCTGCTTGTGATCGTTGTGTTCATCAAGCCAAAGCCGCCTTCTACCAAGACGAGTCCGCCGGTTTATATAGAGGCGCCTGTGGCTATGGCGACCTTACATTGCAGCTCTCAAATGGCTACTTCTCTGCCATTATGCCTCCTCTTTACAAGTACGGCGCTGGGTGTGGCGCTTGTTTTCAAGTAAGATGCAAGAATGAGAAAATTTGTAGTAAAGAAGGGACGAAAATTATTGTCACAGATCGAAATGATAATACATATACAGGATTGGTTCTTAGTCAGAAGGCTTTTGGTGAAATGGCTGTGAGTGGAAAAGATGGATTGCTATTGAGTTATGGAGTTGTGGATGTTGAATTCAAAAGGATTCCTTGTGAATACAATAACAAAAACTTGTTGGTTAGAGTGGAAGAATGGAGTCAATATCCTAATTACTTAGCCATTAAATTGCTTAACCAAGGTGGCCAAACGGAAATAGTAGCGATCGATATAGCTCAGGTTGGTTACTCGAATTGGGATTATATGGGTAGGAATTATGGAGCTGTATGGGAGACTAAAAAACCATTACCGAAAGGACCATTGCAGTTGCGGTTCGTGGTGACTTCTGGATATGATGGAAAGTGGATTTGGGCAAAGTACGTACTTCCTGCTGATTGGAGACCTGGATTGATTTACGATACTGGAGTTCAAATCTACGACATTGCTAAAGAAGGTTGTCCAACAGAACAATGTGGTGATGGACAATGGAAACGATAG 798 42.36 MPFFLPLLFLSLFSSASACDRCVHQAKAAFYQDESAGLYRGACGYGDLTLQLSNGYFSAIMPPLYKYGAGCGACFQVRCKNEKICSKEGTKIIVTDRNDNTYTGLVLSQKAFGEMAVSGKDGLLLSYGVVDVEFKRIPCEYNNKNLLVRVEEWSQYPNYLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAKYVLPADWRPGLIYDTGVQIYDIAKEGCPTEQCGDGQWKR 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4535097 4536352 - CaPI482276_02g003740.1 Cam02g0374 120116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0374 265 PANTHER EXPANSIN-B3 8 247 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cam02g0374 265 Pfam Expansin C-terminal domain 150 230 IPR007117 -
Cam02g0374 265 Gene3D - 141 246 IPR036749 -
Cam02g0374 265 Pfam Lytic transglycolase 59 133 IPR009009 -
Cam02g0374 265 SUPERFAMILY PHL pollen allergen 144 240 IPR036749 -
Cam02g0374 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Cam02g0374 265 Gene3D - 11 140 IPR036908 -
Cam02g0374 265 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Cam02g0374 265 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Cam02g0374 265 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Cam02g0374 265 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Cam02g0374 265 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Cam02g0374 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
Cam02g0374 265 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0374 Cam-Chr2:4535097 Cam02g0378 Cam-Chr2:4564773 8.70E-101 dispersed
Cam02g0374 Cam-Chr2:4535097 Cam02g0375 Cam-Chr2:4542116 1.00E-96 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0374 - - - 0.0