Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0375 ATGGCTTGGTTTCTTGGTTCTCTCTTTCTCTTTTTCATTTCTTCTGCTAATGCTTGTGATCGTTGTGTTTATCAATCTAAAGCTAGCCACCTTTATGATTCACCTACTACATATGGAGGGGCATGTGGTTATGGCAATGTGGCCTTGCAATTCTCTAATGGCTTCTTTGCAGCTGCTGTGCCTTCCCTTTATAGACAAGGAGCTGGTTGTGGTGCTTGCTATCAGGTGAGATGCAAAAACAGAAGGCTTTGTAACACCGTAGGGGCTAAAGTGGTATTGACAGATCAAAATAACGATAACGTGACAGATCTTGTTCTTAGTAAGAGAGCTTTCTTTACAATGGCTTTAAATGGCAAAGGTGCAGACCTGTTGAATCTTGGAGTTGTTGATGTTGAATATAAGAGGGTGCCTTGCGAATACAAATATAAGAATTTGCTGGTGCAAGTGGAAGAAGCAAGTTATAATCCATTTTACTTGGCTATTAAATTCTTGTACCAAGGTGGCCAAACAGATATAGTAGCTGTGGACATAGCTCAAGTAGGCACCTCTGATTGGAGCCATATGAACAGAAATTATGGAGCTGTCTGGGAAACTAACAACATACCTGATGGAGCATTACAATTGAGGATGGTAGTGACTTCTGGATACGATGGAAAGTGGGTTTGGGCAAAATCCGTACTTCCTACTAATTGGAAAAGTGGAGCAATTTACGATACTGGAGTTCAAATCAATGATGTTGCGAAAGAGAGTTGCCCTCCATGGCAATGTGGTGATAACCTATGGAAATGA 789 41.06 MAWFLGSLFLFFISSANACDRCVYQSKASHLYDSPTTYGGACGYGNVALQFSNGFFAAAVPSLYRQGAGCGACYQVRCKNRRLCNTVGAKVVLTDQNNDNVTDLVLSKRAFFTMALNGKGADLLNLGVVDVEYKRVPCEYKYKNLLVQVEEASYNPFYLAIKFLYQGGQTDIVAVDIAQVGTSDWSHMNRNYGAVWETNNIPDGALQLRMVVTSGYDGKWVWAKSVLPTNWKSGAIYDTGVQINDVAKESCPPWQCGDNLWK 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4542116 4544212 - CaPI482276_02g003750.1 Cam02g0375 120117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0375 262 PANTHER EXPANSIN-B3 10 245 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cam02g0375 262 Gene3D - 13 139 IPR036908 -
Cam02g0375 262 Gene3D - 140 244 IPR036749 -
Cam02g0375 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Cam02g0375 262 CDD DPBB_EXLA_N 14 140 - -
Cam02g0375 262 SUPERFAMILY PHL pollen allergen 143 238 IPR036749 -
Cam02g0375 262 SUPERFAMILY Barwin-like endoglucanases 11 141 IPR036908 -
Cam02g0375 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Cam02g0375 262 Pfam Lytic transglycolase 58 133 IPR009009 -
Cam02g0375 262 Pfam Expansin C-terminal domain 147 228 IPR007117 -
Cam02g0375 262 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576(InterPro)
Cam02g0375 262 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576(InterPro)
Cam02g0375 262 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Cam02g0375 262 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576(InterPro)
Cam02g0375 262 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0375 Cam-Chr2:4542116 Cam02g0378 Cam-Chr2:4564773 1.70E-112 dispersed
Cam02g0374 Cam-Chr2:4535097 Cam02g0375 Cam-Chr2:4542116 1.00E-96 tandem
Cam02g0375 Cam-Chr2:4542116 Cam02g0376 Cam-Chr2:4548317 2.70E-118 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0375 - - - 0.0