Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0376 ATGGTGGTGGCGAATATGGAGGGAATTGCCAGATGGGTTTATGGGGGAGCATGTGGCTATGGCAACTTGGCATTGCAGTTCTCCAATGGCTTCTTTGCAGCTGCTGTGCCTTCTCTTTATAAACAAGGAGCTGGTTGTGGGGCTTGCTATCAAGTAAGGTGCAAAAATAGAAGGCTTTGCAATACAGTAGGAACTAAGGTGGTATTGACAGATCAAAACAATGACAATGTAACAGACCTTGTTCTTAGTCCAAAGGCTTTCTTTACCATGGCTCTCAATGGTAAAGGTTCAGATCTTTTGAATCTTGGGGTGGTTGATGTTGAATATAAGAGGGTGGCATGTGAATATCCAAATAGAAATTTGTTGGTGAGAGTGGAAGAATCAAGTTACAACCCATTCAAGTTAGCAATTAAATATTTGTACCAAGGTGGTCAAACAGACATGGTTGCTGTTGATATAGCTCAAGTTGGAACCTCAGATTGGAGCCATATGAAGAGAAGTTATGGAGCTGTTTGGGAAACAGACAATGTACCTGAAGGTGCATTACAATTGAGAATGGTGGTAACTTCTGGCTACGACGGGAAATGGGTTTGGGCAAAGTCCGTACTTCCTACTAATTGGAGAGCTGGGGCGATCTACGATACTGGAGTCCAAATCAACGATGTTGCCAAAGAGAGTTGCCCTCCTTGGCAATGTGCTAATGCTTGTGATCGTTGTATTTTTCAATCTAAGGCCGCTCATTACTATGAGGATACACCTACTTCATATGGAGGTGCATGTGGGTATGAAAATTTGGCCTTGGAAATGTCTCGAGGCTATTTTGCAGCTGCTGTCCCTTCTCTCCACCGACAAGGAATGGGTTGTGGTGCCTGCTACCAGGTAAGATGCAAGAATGCAACATTGTGTAACACAATAGGGACCAAAGTAGTTTTGACAGATCAAAATTCTGATAACAGAACAGATTTTGTTCTTAGTAAAAAAGCTTTTTCTACAATGGCTTTAAAGGGCAAAGGTCAAGAACTTTTGAAAACTGGAATGGTTGATATTGAATACAAGAGGATACCTTGCGAATACAATAAAAATTTATTAATACAAGTAGTAGAATGGAGCCACAAACCATATTATTTGGCTATTAAATTCCTCTACCAAGGAGGTCAAACCGACATAACTGCGGTCAACATAGCAGCTCAGGATGGTTCTGGAGAGTGGCAATACATGAAAAGAAACTATGGAGCCATTTGGGATACAAATAAAGTGCCAGAAGGGGCAATTAAGTTAGTGGTGATTGTAGTTTCAGGGTACAAAAATGGGAGAGGGATCATGATGAGTTATGCACTTCCTAGTGATTGGAAAAATGGAGAAATTTATGATACTGGAATTCAAATCAAAGATATTGCTTCTGAAGCTTGCAATCCTTGGCAATGTGGTGACCAACCATGGAAATGA 1446 41.08 MVVANMEGIARWVYGGACGYGNLALQFSNGFFAAAVPSLYKQGAGCGACYQVRCKNRRLCNTVGTKVVLTDQNNDNVTDLVLSPKAFFTMALNGKGSDLLNLGVVDVEYKRVACEYPNRNLLVRVEESSYNPFKLAIKYLYQGGQTDMVAVDIAQVGTSDWSHMKRSYGAVWETDNVPEGALQLRMVVTSGYDGKWVWAKSVLPTNWRAGAIYDTGVQINDVAKESCPPWQCANACDRCIFQSKAAHYYEDTPTSYGGACGYENLALEMSRGYFAAAVPSLHRQGMGCGACYQVRCKNATLCNTIGTKVVLTDQNSDNRTDFVLSKKAFSTMALKGKGQELLKTGMVDIEYKRIPCEYNKNLLIQVVEWSHKPYYLAIKFLYQGGQTDITAVNIAAQDGSGEWQYMKRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMMSYALPSDWKNGEIYDTGIQIKDIASEACNPWQCGDQPWK 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4548317 4558693 - CaPI482276_02g003760.1 Cam02g0376 120118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0376 481 PANTHER EXPANSIN-B3 10 221 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cam02g0376 481 Gene3D - 358 463 IPR036749 -
Cam02g0376 481 Gene3D - 116 220 IPR036749 -
Cam02g0376 481 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 257 361 IPR007112 -
Cam02g0376 481 Pfam Expansin C-terminal domain 371 433 IPR007117 -
Cam02g0376 481 Pfam Expansin C-terminal domain 123 204 IPR007117 -
Cam02g0376 481 SUPERFAMILY PHL pollen allergen 119 214 IPR036749 -
Cam02g0376 481 SUPERFAMILY Barwin-like endoglucanases 235 360 IPR036908 -
Cam02g0376 481 CDD DPBB_EXLA_N 233 358 - -
Cam02g0376 481 Gene3D - 226 357 IPR036908 -
Cam02g0376 481 Gene3D - 4 115 IPR036908 -
Cam02g0376 481 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 133 215 IPR007117 -
Cam02g0376 481 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 374 458 IPR007117 -
Cam02g0376 481 SUPERFAMILY PHL pollen allergen 367 457 IPR036749 -
Cam02g0376 481 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 15 119 IPR007112 -
Cam02g0376 481 SMART dpbb_1 275 351 IPR007112 -
Cam02g0376 481 SMART dpbb_1 33 109 IPR007112 -
Cam02g0376 481 Pfam Lytic transglycolase 34 109 IPR009009 -
Cam02g0376 481 Pfam Lytic transglycolase 276 349 IPR009009 -
Cam02g0376 481 PRINTS Expansin/Lol pI family signature 36 54 IPR007118 GO:0005576(InterPro)
Cam02g0376 481 PRINTS Expansin/Lol pI family signature 102 118 IPR007118 GO:0005576(InterPro)
Cam02g0376 481 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
Cam02g0376 481 PRINTS Expansin/Lol pI family signature 14 32 IPR007118 GO:0005576(InterPro)
Cam02g0376 481 PRINTS Expansin/Lol pI family signature 161 175 IPR007118 GO:0005576(InterPro)
Cam02g0376 481 SUPERFAMILY Barwin-like endoglucanases 12 118 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0376 Cam-Chr2:4548317 Cam02g0380 Cam-Chr2:4580751 8.70E-99 dispersed
Cam02g0375 Cam-Chr2:4542116 Cam02g0376 Cam-Chr2:4548317 2.70E-118 tandem
Cam02g0376 Cam-Chr2:4548317 Cam02g0377 Cam-Chr2:4560564 2.10E-108 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0376 - - - 0.0