Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0377 ATGTATTATTGGTTCCTCACCTTCCTCTTCTTGCTCGTCTCCTCTACTACGGCTTCTTTTCCTCCTTGTAATCGTTGTGTTCGTCAATCCAAAGCTGCTCATTACTATCAAGATTCACCTACTTCATATGGAGGTGCTTGTGGTTATGCAAATTTAGCATTGCAAATCTCTCAAGGCTACTTTGCAGCTGCTGTCCCTTCCCTTTATAAGGGAGGAGCAGGTTGTGGCGCTTGCTACCAGGTAAGATGCAAAGAAAAACATCTATGCAATACTGCAGGGACTAAAATAGTTTTGACAGATCAAAATAATGATAATAGAACAGATATTGTTCTTAGTAAGAAAGCTTTCTCTGCAATGGCTTTAAGAGGAAAAGCTCAACAACTTTTGAATACTGGACTCGTCGATGTAGAATACAAGAGGATACCTTGTGAATACAAAAATAAAAATCTATTGGTACAAGTGGTAGAATGGAGCCACAAACCATACTATTTGGCAATCAAATTCCTATATCAAGGAGGTCAAACAGACATACAAGCGGTTAACATAGCTCAGGTGGGTTTACCAAAATGGCGCCCTATGAAAAGAAATTATGGACCTATTTGGGATATTAATAGTGTGCCTGAAGGAGGATTACAATTGAGAATGGTAGTAAGTTCAAGATATGATAATGGAAAATGGATTTGGGCAGGTTTTGTGATCCCAGCTGATTGGAAAAATGGTGAAATTTATGATACTGGAGTTCAAATTAATGATATTGCTTTTGAATATTGCCCTCCTTGGCAATGTGATGATGGACAATGGAAATAA 807 38.17 MYYWFLTFLFLLVSSTTASFPPCNRCVRQSKAAHYYQDSPTSYGGACGYANLALQISQGYFAAAVPSLYKGGAGCGACYQVRCKEKHLCNTAGTKIVLTDQNNDNRTDIVLSKKAFSAMALRGKAQQLLNTGLVDVEYKRIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGLPKWRPMKRNYGPIWDINSVPEGGLQLRMVVSSRYDNGKWIWAGFVIPADWKNGEIYDTGVQINDIAFEYCPPWQCDDGQWK 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4560564 4562040 - CaPI482276_02g003770.1 Cam02g0377 120119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0377 268 SUPERFAMILY PHL pollen allergen 155 244 IPR036749 -
Cam02g0377 268 CDD DPBB_EXLA_N 23 145 - -
Cam02g0377 268 Pfam Lytic transglycolase 63 138 IPR009009 -
Cam02g0377 268 PANTHER EXPANSIN-B3 8 251 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cam02g0377 268 Pfam Expansin C-terminal domain 159 234 IPR007117 -
Cam02g0377 268 SUPERFAMILY Barwin-like endoglucanases 18 147 IPR036908 -
Cam02g0377 268 Gene3D - 145 250 IPR036749 -
Cam02g0377 268 Gene3D - 15 144 IPR036908 -
Cam02g0377 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
Cam02g0377 268 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Cam02g0377 268 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Cam02g0377 268 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576(InterPro)
Cam02g0377 268 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576(InterPro)
Cam02g0377 268 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576(InterPro)
Cam02g0377 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 245 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0377 Cam-Chr2:4560564 Cam02g0380 Cam-Chr2:4580751 5.20E-101 dispersed
Cam02g0376 Cam-Chr2:4548317 Cam02g0377 Cam-Chr2:4560564 2.10E-108 tandem
Cam02g0377 Cam-Chr2:4560564 Cam02g0378 Cam-Chr2:4564773 1.70E-104 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0377 - - - 0.0