Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0378 ATGGCTTGGTTTCTTAGCTTATTCTTCGTCTTCCTCATCTCTTCTGCTACTGCTTGCGATCGTTGTATTCACCGATCCAAAGCTACTCATTATTATGGAGATTCACCTACTTCATATGGAGGAGCATGTGGGTATGGAGACTTGGCATTGGAATTTACCAATGGCTACTTTTCAGCTGCTGTGCCTTCTCTCTACAAACAAGGAGCTGGTTGTGGTGCGTGTTTTCAGGTAAGATGTAAAGACAAAAGACTATGCAATACAGCAGGGACCAAAGTAGTGTTGACAGATCAAAATTATGATACAAGAGCAGATTTTGTTCTAAGTAGAAAGGCTTTTTCAGCCATGGCTTTGAAAGGAAAAGGTCAACAACTTTTGAATACTGGGATTGTTGATGTAGAATACAAGAGGATACCTTGTGGATACAAAAACAAAAATTTGGCCGTACGAGTTGAAGAATCAAGTTATAATCCAAATTATTTAGCCATTAAACTTTTGTACCAAGGTGGCCAAACAGAGATAGTGGCTGTCGAGATAGCTGAGGTTGGTTCATACGAATGGGTGAGCTTAAGCAGAAACTATGGAGCAGTTTGGGATACAAATAAAGTACCCAAAGGAGCATTACAAATGAGAATGGCATTTACTTCAGGATACGATGGAAAATGGGTTTGGGCAGAATATGTTCTTCCTGTTGATTGGAAAATTGGAGCCATTTACGATACTGGAGTTCAAATTTATGATATTGCTAAAGAGGGTTGCCTTGCATCACAGTGTGGTGATAAACCATGGAAATAA 792 39.52 MAWFLSLFFVFLISSATACDRCIHRSKATHYYGDSPTSYGGACGYGDLALEFTNGYFSAAVPSLYKQGAGCGACFQVRCKDKRLCNTAGTKVVLTDQNYDTRADFVLSRKAFSAMALKGKGQQLLNTGIVDVEYKRIPCGYKNKNLAVRVEESSYNPNYLAIKLLYQGGQTEIVAVEIAEVGSYEWVSLSRNYGAVWDTNKVPKGALQMRMAFTSGYDGKWVWAEYVLPVDWKIGAIYDTGVQIYDIAKEGCLASQCGDKPWK 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4564773 4567548 - CaPI482276_02g003780.1 Cam02g0378 120120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0378 263 PANTHER EXPANSIN-B3 7 246 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cam02g0378 263 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Cam02g0378 263 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Cam02g0378 263 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Cam02g0378 263 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576(InterPro)
Cam02g0378 263 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Cam02g0378 263 Gene3D - 141 245 IPR036749 -
Cam02g0378 263 Pfam Expansin C-terminal domain 147 229 IPR007117 -
Cam02g0378 263 SUPERFAMILY PHL pollen allergen 144 239 IPR036749 -
Cam02g0378 263 CDD DPBB_EXLA_N 14 141 - -
Cam02g0378 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Cam02g0378 263 PRINTS Major pollen allergen Lol pI signature 165 180 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cam02g0378 263 PRINTS Major pollen allergen Lol pI signature 149 164 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cam02g0378 263 PRINTS Major pollen allergen Lol pI signature 216 233 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cam02g0378 263 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cam02g0378 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 240 IPR007117 -
Cam02g0378 263 Pfam Lytic transglycolase 59 134 IPR009009 -
Cam02g0378 263 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
Cam02g0378 263 Gene3D - 12 139 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0374 Cam-Chr2:4535097 Cam02g0378 Cam-Chr2:4564773 8.70E-101 dispersed
Cam02g0375 Cam-Chr2:4542116 Cam02g0378 Cam-Chr2:4564773 1.70E-112 dispersed
Cam02g0378 Cam-Chr2:4564773 Cam02g0380 Cam-Chr2:4580751 3.60E-99 dispersed
Cam02g0377 Cam-Chr2:4560564 Cam02g0378 Cam-Chr2:4564773 1.70E-104 tandem
Cam02g0378 Cam-Chr2:4564773 Cam02g0379 Cam-Chr2:4573677 2.60E-97 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0378 - - - 0.0