Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0380 ATGACTTCTTCATTTCTTACTTTTATTAGCTTCTTTGTTCTCTTTATCTCTTTTGTTAATGCTTGCGATCGATGCATTCATCAATCTAAAGCGGCTTATTACTATAGTGATGCACCTATTACATATGGGGCATGTGGCTATGGTTCTTTGGCAAATCAATCTTTCCATGGGTACATTGCTGGTGCGGTGCCTTTGCTATACAAACAAGGAGCTGGTTGTGGTGCTTGCTTTCAAGTGAGGTGCAAGAACAAGAAGCTGTGCAGCCCAATAGGAGCTAAAATAGTTTTGACAGATCAAAATTATGATAACCGAACTGATTTTGTTCTTAGTAGGAAAGCTTTCTCAGAAATGGCTCGATGGGGCAAGGCCCAAGATCTTTTGAAACTTGGAATGGTTGATATTGAATACAAGAGGGTACCATGCGGATACAAAAACAAAAATTTGTTGGTGAGAATAGAAGAATGGAGCAACAAGCCTTACTACTTGGCCATGAAATTCCTTTACCAAGGTGGCCAGACAGAAATAAAAGCAATTGACATTGCTCAAGTTGGTTCTTCAGATTGGGAAGCTTTGAAGAGAAACTATGGAGCTATTTGGGATACAAGTAAAGTACCTGAAGGAGCATTGCAACTAAGAATTGTGGTAGCTTCAGGATATGATAATGAGAATTGGATTTGGACAAATTATGAAATTCCTGCTGATTGGAAAAATGGAGAAACTTATGATACAGGGATTCAAATTGAAGATATTGCCAAAGAATTTTGTTCCCCAAGAGAGTGTGGTGATAGAATATGGAAATGA 801 38.33 MTSSFLTFISFFVLFISFVNACDRCIHQSKAAYYYSDAPITYGACGYGSLANQSFHGYIAGAVPLLYKQGAGCGACFQVRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKRVPCGYKNKNLLVRIEEWSNKPYYLAMKFLYQGGQTEIKAIDIAQVGSSDWEALKRNYGAIWDTSKVPEGALQLRIVVASGYDNENWIWTNYEIPADWKNGETYDTGIQIEDIAKEFCSPRECGDRIWK 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4580751 4582933 - CaPI482276_02g003800.1 Cam02g0380 120122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0380 266 Gene3D - 18 141 IPR036908 -
Cam02g0380 266 SUPERFAMILY PHL pollen allergen 146 242 IPR036749 -
Cam02g0380 266 SUPERFAMILY Barwin-like endoglucanases 11 145 IPR036908 -
Cam02g0380 266 Gene3D - 143 247 IPR036749 -
Cam02g0380 266 PANTHER EXPANSIN-B3 9 249 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Cam02g0380 266 Pfam Expansin C-terminal domain 152 218 IPR007117 -
Cam02g0380 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 243 IPR007117 -
Cam02g0380 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 146 IPR007112 -
Cam02g0380 266 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576(InterPro)
Cam02g0380 266 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576(InterPro)
Cam02g0380 266 PRINTS Expansin/Lol pI family signature 129 145 IPR007118 GO:0005576(InterPro)
Cam02g0380 266 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576(InterPro)
Cam02g0380 266 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576(InterPro)
Cam02g0380 266 CDD DPBB_EXLA_N 17 143 - -
Cam02g0380 266 Pfam Lytic transglycolase 65 136 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0376 Cam-Chr2:4548317 Cam02g0380 Cam-Chr2:4580751 8.70E-99 dispersed
Cam02g0377 Cam-Chr2:4560564 Cam02g0380 Cam-Chr2:4580751 5.20E-101 dispersed
Cam02g0378 Cam-Chr2:4564773 Cam02g0380 Cam-Chr2:4580751 3.60E-99 dispersed
Cam02g0380 Cam-Chr2:4580751 Cam03g1206 Cam-Chr3:23967140 2.40E-82 dispersed
Cam02g0379 Cam-Chr2:4573677 Cam02g0380 Cam-Chr2:4580751 3.90E-101 tandem
Cam02g0380 Cam-Chr2:4580751 Cam02g0381 Cam-Chr2:4584430 4.20E-71 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0380 - - - 0.0