Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0404 ATGGCGGACGGAGATGGCAGCGTGGGAAGCCTCGATCTCCTGCCTTCTGCTGTCCTTGCTACCATCATGACTAAGCTCGATTTGCCTTCCATTTGCTCCGTTGCCTCCACATGCAGGACCTTCCATTCCTGTGCTTCTCAAATTCTCAATTTTCTCCCCAGTTTTCATCTCCTTGAAATTTCTCCAACGGTGGAATTTCTGAGGCCTCTGCTGCCTCCAAATCCTTTCCTGAGAAGCCTAAAGGTAGATTGTGGTCAGCTTGATGATTCAGCTATCCAGCTTCTACTCAAGCCTTCCTTGCACGAACTCTGTCTCCATAATTGCGCTGATTTCAGTGGGAAATTGCTTTCTGAGATCGGAGGGTGCTGCAAGGATTTAAGGTCCCTCTATTTGAGTTCAGTTGCTGAAAAAAGAGGTCGGGCAATTCATATTGCGGATCTAGAAGAGTTACTAAGTGGTTGCACACAATTGGAAGTATTAACCTTGATGTTTGATGTCTCATTTTTCCTTCGTCAAAATTTTGCACGAGTCTGGGCTATGGCTTCAGAAAAACTAACTTCTCTGGAGATTGGCTGTATCTATTCTGTTACAGTCACCGAAATGCTCAGCCAAAATTTGGGTATTGGTAATTCTATGAATCGGATCAGTCCATCTATGTGGCCTAACATCGAAAAGTTGTGCCTTTCAGTCGACTACATAACTGATGCAATGGTTGGTGCAATATCAAAAGGTCTTATCTCCTTGACTCATTTGGAACTCCAAGATGCCCCCATCATTGAACCAAGATTTTCTTTTGACCTAACCAACGTTGGCCTTCAACAAATCAATCAGCTGTCGAAATTGAAGCATCTCTCTTTGGTACGAAGTCAGGAATTTCTTATAACTTATTTTAGAAGAGTAAACGATCTTGGGATCCTCTTAATGGCTGAGGGATGTGCTGACCTGGAAAGCATCTGTCTTGGAGGCTTTTGTCGTGTTACAGACACAGGTTTCCGGACAATTCTGCATACGTTCTCTAATTTAAACAAGCTTAGGGTGTTTCATGGAATCCAATTAACCCATCTAGTTTTCCATGACATCTCTGCTACTTCCCTTTCCTTGGAACATGTTAGCTTAAGATGGTGCAGTCTTCTAACAAACGATGCCGTCAAAAACTTATCATTGAACAAGGATCTAAGTTATCTTGACTTGAGAGATTGCAGAAGCCTTCGGGATGAAGCGCTTCAAGCTATCGGAACTATTCCAAAACTGAAAACATTGCTTTTGGACGGGTCCGATATTAGTGATGCAGGATTGTCTCACTTAAGACCCTTGATTATGAGCTCACTAGTCTCCTTGTCTGTTAGAAGTTGCAAGAAGCTTACAGATAAATCCATCACTGTCCTGTTTGATGGCTTATCTAAAATAGAACTACATGTATTAGATCTATCCAACCTTCCTTACCTATCTGATGCTGCAGTTTTACAACTGACCAGAAGCAAGTTTGCGATATCTGAACTCCGAATGCGTCAATGTCCGCTCATTGGTGATGTCTCGGTCATGGCATTAGCCTCAATGCAGGTCAATGAAGACCAACGACATGGGAGTAGCCTACGGCTGTTGGATTTGTACAACTGCGGTGGCCTTACACAGCTCTCATTCAAGTGGTTAAAGAATCCATACTTTCCAAGGTTGAGATGGTTGGGTGTGACGGGAAGTCTACATCGCGATTTGGTAGATGCTTTAGCCAGAAGTAGACCATTCTTGCACGTGGCATGTCACGGCGAGGAGTTGGGAGCCGACCATTGGGGTAGCTCAGACAGTCTCTATTTATACCACTATGACGAGGTGGATGAATTTGAACAGTGGCTATTTGATGGTGAGGTCGAGATCGAGGACGACGACGATGACAACAATATGGCAGATGCTGAGAATGATGCCGAGCTAATTCTATAA 1935 43.77 MADGDGSVGSLDLLPSAVLATIMTKLDLPSICSVASTCRTFHSCASQILNFLPSFHLLEISPTVEFLRPLLPPNPFLRSLKVDCGQLDDSAIQLLLKPSLHELCLHNCADFSGKLLSEIGGCCKDLRSLYLSSVAEKRGRAIHIADLEELLSGCTQLEVLTLMFDVSFFLRQNFARVWAMASEKLTSLEIGCIYSVTVTEMLSQNLGIGNSMNRISPSMWPNIEKLCLSVDYITDAMVGAISKGLISLTHLELQDAPIIEPRFSFDLTNVGLQQINQLSKLKHLSLVRSQEFLITYFRRVNDLGILLMAEGCADLESICLGGFCRVTDTGFRTILHTFSNLNKLRVFHGIQLTHLVFHDISATSLSLEHVSLRWCSLLTNDAVKNLSLNKDLSYLDLRDCRSLRDEALQAIGTIPKLKTLLLDGSDISDAGLSHLRPLIMSSLVSLSVRSCKKLTDKSITVLFDGLSKIELHVLDLSNLPYLSDAAVLQLTRSKFAISELRMRQCPLIGDVSVMALASMQVNEDQRHGSSLRLLDLYNCGGLTQLSFKWLKNPYFPRLRWLGVTGSLHRDLVDALARSRPFLHVACHGEELGADHWGSSDSLYLYHYDEVDEFEQWLFDGEVEIEDDDDDNNMADAENDAELIL 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4755747 4759250 + CaPI482276_02g004040.1 Cam02g0404 120146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0404 644 Pfam F-box-like 12 47 IPR001810 GO:0005515(InterPro)
Cam02g0404 644 SUPERFAMILY RNI-like 48 346 - -
Cam02g0404 644 PANTHER UNCHARACTERIZED 62 437 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Cam02g0404 644 SUPERFAMILY F-box domain 7 47 IPR036047 GO:0005515(InterPro)
Cam02g0404 644 SMART LRR_CC_2 494 519 IPR006553 -
Cam02g0404 644 SMART LRR_CC_2 440 465 IPR006553 -
Cam02g0404 644 SMART LRR_CC_2 468 493 IPR006553 -
Cam02g0404 644 SMART LRR_CC_2 364 389 IPR006553 -
Cam02g0404 644 SMART LRR_CC_2 312 337 IPR006553 -
Cam02g0404 644 SMART LRR_CC_2 390 414 IPR006553 -
Cam02g0404 644 SMART LRR_CC_2 97 122 IPR006553 -
Cam02g0404 644 SUPERFAMILY RNI-like 301 565 - -
Cam02g0404 644 Gene3D Ribonuclease Inhibitor 41 438 IPR032675 -
Cam02g0404 644 Gene3D Ribonuclease Inhibitor 439 523 IPR032675 -
Cam02g0404 644 FunFam F-box/LRR-repeat protein 10 isoform A 48 464 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0404 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0404 Cam-Chr2:4755747 Cam09g2208 Cam-Chr9:36627549 1.20E-58 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g222 . . . . . . . . . . . . . . . . . Bhi05g01664 Tan02g0638 . . Hepe02g0397 . . Cla02g00399 Cam02g0404 Cec02g0404 Cco02g0419 Clacu02g0407 Cmu02g0403 Cre02g0737 Cone12ag1252 Cone8ag1307 . . . Csa07g00134 . Cme01g01214 . . Bda15g01019 . Bpe15g00796 . . Bma08g00739 . . . Cma11g01358 . Car11g01391 . . . . . . . . . . . . . . . . . Lsi11g01228 . Chy01g00652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006869 2 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 2 37