Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0424 ATGATGGAAGAAAAAGCTGATGTTGAAGAGATAGTGATCGTGGGAGCCGGAATTGCAGGCCTCACCACCGCCTTAGGGCTTCACAGGTTAGGGTTTCGAAGCTTAGTTTTGGAAACTTCCGATTCTTTGAGAGCCGCTGGATATGCTTTGACCACATGGAATAATGCTTGGAAGGCTCTCGATGCCTTGGGAGTCGCCGATTCGCTCCGCCGCCAGCACGATCGCATCGTCGGAAACGTCACTTTCTCGGCGGTTTCTGGGCTTCGAACTTCGGATTTGCTCTTTACGGCTCACCGAGACCAAGAAGCTAGAACTGTGATGAGAAAGTTTGATGGCACAATTCTCAAAACCAAGGTGTTGATTGGATGTGATGGAGTGAAGTCAGCGGTGGCTAAGTGGCTTGGCTTCAAGAAGCCATCTTTGTCAGGAAGAAATGCTGCTAGAGGGATTGTAACATACAACGATGGTCATGGATTTGATAATAAGTTCATGTGGTTTTTTAGCAAAGGCCTTTGCTTTGGTGTTATGCCATGTAATTCCAACACGGTCTATTGGTTTAGTACTTGGCGTCCTTCTAAACAAGAGGAGGAGATTGAAGAGAACCCACTAAGATTGAAGCAACATATTTTAAGCAAGCTTGGAAAGGTACCTGATCGAATAAGGGATGTGGTTGAAGACACTGAAATTGATTCTTTTGTGTCTCTTCCATTGAGATCTAGGCGCCCTTGGGACCTTGTTTGGAATAACTTTTCTCGAGGTAACGTTAGCATTGCAGGCGATGCACTCCACTCGATGACCCCAGATCTCGGACAAGGAGGTTGTTCTGCATTGGAAGACGGTGTCATTCTTGCCCGATGTTTAGCCGAAGCTATGTGGAGGAATCCAAAGGAGGAAGTAGATGAGAAGGAGGAATATAAAAGGATTGAAAAGGGGTTGGAGAAATATGCAAAAGAGAGGAGATGGAGAAGCATTAAGCTTATAACTGCATCTTATGTGGTTGGTGCAATTCAAGAGAGTAAAGGGAAAGTGATGAACTACTTGAGGGATAACATCTTCCCTGATTTTCTTGTTGGTTTATTAATGAAGATCTCTGATTTTGATTGTGGGACACTTGCCTGA 1119 44.86 MMEEKADVEEIVIVGAGIAGLTTALGLHRLGFRSLVLETSDSLRAAGYALTTWNNAWKALDALGVADSLRRQHDRIVGNVTFSAVSGLRTSDLLFTAHRDQEARTVMRKFDGTILKTKVLIGCDGVKSAVAKWLGFKKPSLSGRNAARGIVTYNDGHGFDNKFMWFFSKGLCFGVMPCNSNTVYWFSTWRPSKQEEEIEENPLRLKQHILSKLGKVPDRIRDVVEDTEIDSFVSLPLRSRRPWDLVWNNFSRGNVSIAGDALHSMTPDLGQGGCSALEDGVILARCLAEAMWRNPKEEVDEKEEYKRIEKGLEKYAKERRWRSIKLITASYVVGAIQESKGKVMNYLRDNIFPDFLVGLLMKISDFDCGTLA 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4971315 4976591 + CaPI482276_02g004240.1 Cam02g0424 120166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0424 372 Pfam FAD binding domain 95 291 IPR002938 GO:0071949(InterPro)
Cam02g0424 372 Pfam FAD binding domain 10 77 IPR002938 GO:0071949(InterPro)
Cam02g0424 372 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN 110 371 IPR044560 -
Cam02g0424 372 Gene3D - 11 42 IPR036188 -
Cam02g0424 372 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 252 267 - -
Cam02g0424 372 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 10 32 - -
Cam02g0424 372 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 267 283 - -
Cam02g0424 372 Gene3D - 43 73 - -
Cam02g0424 372 Gene3D - 99 353 IPR036188 -
Cam02g0424 372 SUPERFAMILY FAD/NAD(P)-binding domain 10 354 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0424 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0422 Cam-Chr2:4958458 Cam02g0424 Cam-Chr2:4971315 1.40E-115 dispersed
Cam02g0424 Cam-Chr2:4971315 Cam09g1289 Cam-Chr9:15607768 4.10E-56 dispersed
Cam02g0423 Cam-Chr2:4962229 Cam02g0424 Cam-Chr2:4971315 1.50E-200 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g181 . . . . . . . . Cmo19g00759 . . . . . Sed04g3841 . Cpe15g00602 Bhi05g01693 Tan02g0663 Cmetu01g2493 . Hepe02g0414 . . Cla02g00414 Cam02g0424 Cec02g0422 Cco02g0440 Clacu02g0425 Cmu02g0420 Cre02g0754 Cone12ag1241 Cone8ag1296 . . . Csa07g00113 . Cme01g01246 Blo04g00580 . . Bda14g00623 Bpe15g00804 . . . . . . . Cma19g00748 . Car19g00578 . . . . . . . . . . . . . . . . Lsi11g01212 . Chy01g00670 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001099 3 2 7 1 2 3 4 2 2 3 2 2 0 4 2 3 2 5 2 2 2 2 1 2 2 1 2 4 2 7 78