Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0456 ATGTCGAATTCCTCTTCGAACTTCACCCAGAGCCAGAATGGGAATGTTAAAAACAATGATGCTTTATTCACAGTGGATGAGATTGAAGAAAGTGAGTTTTCGAAGCTATTGGATAGGCCAAGGCCGTTGAACATGGAGAGACAGAGGTCGTTTGATGAAAGATCGCTTGGGGATTTGGCGATTGGTTTTTCCCCACGGCTATCGACGAGAGTTTCTTCAGAGAACTTTGGTCGATTGACTGATTATTATGATCAAACTCCATCCCCCGGCAGAAAATCGGATTTCAATACTCCAAGATCACAGACTGGATTCGAGCAGCATCCTATGGTGGCTGAAGCTTGGGAAGCTTTGAGGCGTTCGTTGGTCCATTTCCGTGGCCAACCAGTTGGTACTATTGCTGCGTTGGACTGTACTGAAGAAAATCTTAATTATGATCAAGTGTTTGTGAGAGACTTCGTCCCGAGCGCATTTGCTTTTCTAATGAATGGGGAGCCTGAAATAGTAAAAAACTTTATCTTAAAAACTCTTCGGCTTCAGTCATGGGAGAAAAAGATTGACAGATTCCAGCTTGGAGAAGGGGTGATGCCTGCTAGTTTCAAAGTGCTTCATGATCCAGTGAGGAATACTGAAACTTTAATTGCAGATTTTGGAGAGAGTGCAATAGGAAGAGTTGCTCCGGTTGACTCTGGATTTTGGTGGATTATATTGCTTAGAGCATACACAAAGTCCACTGGTGATACTTCCTTGGCTGAACTGCCAGAATGCCAAAAGGGAATGCGCCTTATTTTGAGTCTGTGTCTTTCAGAAGGGTTTGACACATTCCCAACCCTTCTCTGTGCTGATGGATGCTGCATGATTGATAGACGAATGGGTGTATATGGCTACCCAATTGAAATTCAAGCTCTTTTCTTTATGGCTTTAAGGTGTGCTTTGCTTTTACTTAAGCAAGACCACGAGGGGAAGGACTTTGTAGAAAGAATAACAAAACGGCTTCACGCCTTGAGCTATCACATGAGAACTTACTTTTGGCTCGACCTAAAGCAACTAAATGATATATACCGATATAAAACTGAAGAATACTCTCACACTGCTTTGAACAAGTTCAATGTAATACCCGATTCTCTTCCCGAATGGATTTTTGACTTCATGCCAACTCGTGGTGGTTACTTTATCGGAAACGTCAGCCCTGCAAGAATGGATTTCCGTTGGTTTTGCTTGGGAAACTGCATTGCAATTCTTTCTGCCTTGGCAACACCAGAGCAGTCCACTGCCATTATGGATCTTATTGAATCACGTTGGGAAGAGCTGGTCGGAGAAATGCCTTTAAAGGTTTGTTACCCTGCCATTGAAAGTCATGAGTGGCGGATTGTAACTGGGTGTGATCCAAAAAATACAAGATGGAGTTACCATAATGGTGGTTCTTGGCCAGTTCTCCTATGGCTTCTAACAGCTGCATGTATCAAGACCGGGCGACCCCAGATTGCGAGACGTGCACTCGAACTGGCTGAAACCAGGCTACTGAAAGACAACTGGCCAGAATATTATGATGGGACAGTTGGGCGGTACATTGGGAAACAGGCACGAAAGTTTCAGACGTGGTCGATTGCAGGTTATTTAGTGGCAAAGATGATGCTGGAAGACCCATCTCATTCAGGCATGGTGTCCTTGGAGGAAGACAAGCAGATGAAACCTGTAATGAAAAGCATCATCTTTCAAACATCTTCTGTCGCCTGCTGCAATGGAGTTCCGACCACGACACTTAGCCTCTCCAAAGATTGTTATGATCCCTTGGATCCTAATGGAAACATTACCATTACTTATGATATTCAAACTTGGACCACTCGTGGATATGTGGGGAGGGTCACTGTCCAAAACTACTACCAGTTCCGGCATGTGGAGAAGCCTGGTTGGAGGCTTGGGTGGACATGGACGAGGGGTGAAGTCATCTGGTCAATGAGTGGAGCTTTTGTGACTAAACAGGGAAATTGCTCATTGTTCAAATTTGATCCTCCACATTCCTGTGAGAAGAGCCCTGTCATTCTCGATCTTGTGTTGGAGGCATCATTGGAAAACAGGTCGGAGGGTTGTTGTCGCAGTGGGGTTCTTTCTGCTTGGGCTGTAGACCCTTCCAAATCTTTCTCTTCGTTTGAAATCTCAGTGGGGAGCATGGATGGAGATGGCAATGAGCAACCGCCCGCCAATATTACTCTCATGGCGCCTGGTCCTGGTTACACTTGCAGCCCCTTCTTGGACGCTCATCCAACTGTTTCTTCTCTGATTGATGGCAAAAGACAAGTTCAGGCTTTTAGAACATGGAAATCAACATGTACTTACTCCATATTTGTGTATAACAAGACACCACTCTGTTGTGTCTCACTCTCAGCATTTTACAATCCCTCCATCACACCTTGCCCTATATGCAGCTGTGGATGCAGAGAAGCAAACCAAACCTCTGTTCAATGTACAAGAGACAAACTCCAGTTGTCGACCACGGAATCGGCTAATCTTCTTGCCTCAGTACAGTGCTCGGATCACATGTGTCCGGTTCGAGTGCATTGGCATGTTAAGACGAACTACATCGACCACTGGAAGGTGAAACTCACAGTTTCCAACTACAACTATGACAGAAACTACTCAAACTGGAACATCCTAGTGCAGCATCCAGGATTTAGCCAATCAACAGAAGCATTTAGTTTCAATAGTTCACAACTTCCATCCGTCAGATATGGAGATGAGTTGGCTCTCTTTTGGGGCATTGAGTATTACAACACAGAGCTTGTGCAATCCACTGAGAGTAATGTAGGGTATGTGACAACAGATATTCTTCTTGAGAAAGATTTAGAATCATTCACATTAAGCAATGGTTGGGCCCTTCCAAGAAGAGTTTATTTCAATGGAGATACCTGTCAAATGCCTTTACCAGACACCTTCCCAATGCTACCAAATGGGAGTTCTAAGCAAAGCCTCTCACTTTTCATCTCCATTATTCTTTTTTTGAACTTTTTGTTTTGGTGA 3015 44.21 MSNSSSNFTQSQNGNVKNNDALFTVDEIEESEFSKLLDRPRPLNMERQRSFDERSLGDLAIGFSPRLSTRVSSENFGRLTDYYDQTPSPGRKSDFNTPRSQTGFEQHPMVAEAWEALRRSLVHFRGQPVGTIAALDCTEENLNYDQVFVRDFVPSAFAFLMNGEPEIVKNFILKTLRLQSWEKKIDRFQLGEGVMPASFKVLHDPVRNTETLIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDTSLAELPECQKGMRLILSLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYPIEIQALFFMALRCALLLLKQDHEGKDFVERITKRLHALSYHMRTYFWLDLKQLNDIYRYKTEEYSHTALNKFNVIPDSLPEWIFDFMPTRGGYFIGNVSPARMDFRWFCLGNCIAILSALATPEQSTAIMDLIESRWEELVGEMPLKVCYPAIESHEWRIVTGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPQIARRALELAETRLLKDNWPEYYDGTVGRYIGKQARKFQTWSIAGYLVAKMMLEDPSHSGMVSLEEDKQMKPVMKSIIFQTSSVACCNGVPTTTLSLSKDCYDPLDPNGNITITYDIQTWTTRGYVGRVTVQNYYQFRHVEKPGWRLGWTWTRGEVIWSMSGAFVTKQGNCSLFKFDPPHSCEKSPVILDLVLEASLENRSEGCCRSGVLSAWAVDPSKSFSSFEISVGSMDGDGNEQPPANITLMAPGPGYTCSPFLDAHPTVSSLIDGKRQVQAFRTWKSTCTYSIFVYNKTPLCCVSLSAFYNPSITPCPICSCGCREANQTSVQCTRDKLQLSTTESANLLASVQCSDHMCPVRVHWHVKTNYIDHWKVKLTVSNYNYDRNYSNWNILVQHPGFSQSTEAFSFNSSQLPSVRYGDELALFWGIEYYNTELVQSTESNVGYVTTDILLEKDLESFTLSNGWALPRRVYFNGDTCQMPLPDTFPMLPNGSSKQSLSLFISIILFLNFLFW 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5256804 5266272 + CaPI482276_02g004560.1 Cam02g0456 120198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0456 1004 Gene3D - 138 543 IPR012341 GO:0005975(InterPro)
Cam02g0456 1004 SUPERFAMILY Six-hairpin glycosidases 113 541 IPR008928 GO:0005975(InterPro)
Cam02g0456 1004 Pfam Alkaline and neutral invertase 113 548 IPR024746 GO:0033926(InterPro)
Cam02g0456 1004 MobiDBLite consensus disorder prediction 79 102 - -
Cam02g0456 1004 FunFam probable alkaline/neutral invertase B 138 541 - -
Cam02g0456 1004 PANTHER - 88 567 IPR024746 GO:0004575(PANTHER)|GO:0005987(PANTHER)|GO:0033926(InterPro)
Cam02g0456 1004 Pfam COBRA-like protein 617 779 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0456 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0456 Cam-Chr2:5256804 Cam09g0992 Cam-Chr9:10287522 4.40E-270 dispersed
Cam02g0456 Cam-Chr2:5256804 Cam07g1616 Cam-Chr7:30773865 6.60E-117 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g97 . . Bda06g00969 . . . . Bma12g00525 . Cmo11g01723 . . . . . Cpe04g00574 . Bhi05g01747 . . . . . . Cla02g00449 Cam02g0456 Cec02g0455 Cco02g0474 Clacu02g0457 Cmu02g0452 Cre02g0786 Cone12ag1209 Cone8ag1261 . . . Csa07g00078 . Cme01g01286 . . . . . . . . . . . Cma11g01397 . . . . . . . . . . . . . . . . . . . Lsi11g01179 . Chy01g00699 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008827 2 4 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 0 1 1 0 2 1 1 1 1 1 2 34