Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0480 ATGGGTGATACTGAAGATGCTAACACTGAGAACATGCGAAATCTTCAATGTTCGTATGGAGTATCTTCTTCTTCAGCTGGAAATCTTCCTTTCTCGATGGATCAACTTAAAATTTCCCAAATGAACTGCTCACAAATCCGTCCACCGCACTTTCAGTCAAATTTTCTTGCGGATAATAGTAGAAGAATTGGGATACCTCCTAGCCCCAACTCACCGCAGATCCCACCAATTTCACCGTATTCTCAGATCCCGATCTCGCGTCCGATGAATCAGCAAAATTATAACCCGGTGCCTACTCATTCCCGATCGTTGTCTCAGCCTTCTTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGCCCATCTCCATTTCGTGAATCCCCAACTACATCGAATTCAGATCAGGTTTCTGCAGATACATCAATGGAGGATAGGGATAACAGTTCACATTCTTTGTTGCCTCCCTCACCTTATATGAGGGCCAATTCTTCTAAGATGGGAGATTCTTTACCTCCTCGTAAAGCACATAGGCGGTCTAGTAGTGATATTCCATTTGGATTATCTTCAATGATTCAGCCATCTCCTCTTCTCCCATTCAATAGCTCTGGTGGATTGGAACGATCAACTAGTAGTAAAGAGAATGCTGGCTTATTAAAGCCCGCCAGCCAGTTTGTTAAAAGAGAACCTAGTTTGGAGAAAAGCGTTGACAACAATTTAGAAGGAATGGGTGAGAGGAAATCTGATGGGGACAGCGTGGACGACTTGTTTTCTGCTTATATGAATTTGGATAATATCGATTTGTTCAACTCTTCTGGGACTAACGACAAGAATGGTCAAGAGAATCGAGAGGATTTGGATAGTAGGGGTAGTGGAACAAAGACAAATGGGGGTGAGAGCAGTGATAATGAAGCAGAAAGCAGTGTAAATGAAAGCGGGGATAGCGCTCAAATGCCTGGATTGAATTCATCTGCTGAGAAGAGGGAAGGGATCAAACGGACCGCAGGGGGAGATATTGCTCCAACTACCAGACATTACCGAAGTGTCTCCATGGATAGTTTCATGGGCAAGTTGCAGTTTGGTGATGAGTCTCCCAAAATGCCTCCCACACCACCTGGCATTCGCCCGGGGCAACTTTCTTCAAACAACTTAGTTGATGGTAATTCTGCTCCATTCAGTTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCCGAGATTGCTTTGACTGATCCCAAGCGTGCAAAGAGGATCTTGGCAAACCGTCAGTCTGCTGCTCGATCGAAAGAGCGAAAGATGCGGTATATATCTGAGCTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACACTGTCCGCTCAACTCACACTTCTACAGAGAGATTCCGTGGGCCTTACAAACCAGAATAATGAACTGAAGTTTCGACTACAAGCCATGGAACAACAAGCACAACTACGGGATGCTCTTAACGAAGCCTTAACCGCGGAGGTTCAGAGATTGAAACTCGCTACAACAGAGCTAAATGCACAGTCTCATCCCTCCAACGGAGTAATGCCCCAATCTTCCATCAATCACCATGGCCTACAGCTTCAGCTTCAGCACCAGCAACAACAACAGATCCAGCAGAATGGGAATGCAACCACAAAACCAGAATCCAACCAATAA 1698 44.94 MGDTEDANTENMRNLQCSYGVSSSSAGNLPFSMDQLKISQMNCSQIRPPHFQSNFLADNSRRIGIPPSPNSPQIPPISPYSQIPISRPMNQQNYNPVPTHSRSLSQPSFFSLDSLPPLSPSPFRESPTTSNSDQVSADTSMEDRDNSSHSLLPPSPYMRANSSKMGDSLPPRKAHRRSSSDIPFGLSSMIQPSPLLPFNSSGGLERSTSSKENAGLLKPASQFVKREPSLEKSVDNNLEGMGERKSDGDSVDDLFSAYMNLDNIDLFNSSGTNDKNGQENREDLDSRGSGTKTNGGESSDNEAESSVNESGDSAQMPGLNSSAEKREGIKRTAGGDIAPTTRHYRSVSMDSFMGKLQFGDESPKMPPTPPGIRPGQLSSNNLVDGNSAPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATTELNAQSHPSNGVMPQSSINHHGLQLQLQHQQQQQIQQNGNATTKPESNQ 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5461850 5464247 - CaPI482276_02g004800.1 Cam02g0480 120222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0480 565 SMART brlzneu 418 482 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g0480 565 MobiDBLite consensus disorder prediction 59 250 - -
Cam02g0480 565 MobiDBLite consensus disorder prediction 358 380 - -
Cam02g0480 565 FunFam probable transcription factor PosF21 421 474 - -
Cam02g0480 565 MobiDBLite consensus disorder prediction 289 320 - -
Cam02g0480 565 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 420 483 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g0480 565 Coils Coil 501 521 - -
Cam02g0480 565 Coils Coil 438 493 - -
Cam02g0480 565 Gene3D - 421 473 - -
Cam02g0480 565 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 156 553 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cam02g0480 565 MobiDBLite consensus disorder prediction 83 115 - -
Cam02g0480 565 MobiDBLite consensus disorder prediction 267 343 - -
Cam02g0480 565 SUPERFAMILY Leucine zipper domain 422 473 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g0480 565 Pfam bZIP transcription factor 422 476 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g0480 565 CDD bZIP_plant_RF2 423 472 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam02g0480 565 MobiDBLite consensus disorder prediction 181 216 - -
Cam02g0480 565 MobiDBLite consensus disorder prediction 538 565 - -
Cam02g0480 565 MobiDBLite consensus disorder prediction 228 250 - -
Cam02g0480 565 MobiDBLite consensus disorder prediction 1 25 - -
Cam02g0480 565 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0480 Cam-Chr2:5461850 Cam08g1132 Cam-Chr8:17661171 5.70E-41 dispersed
Cam02g0480 Cam-Chr2:5461850 Cam02g0482 Cam-Chr2:5474120 7.70E-272 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51445 PF00170 bZIP_1 7.50E-09 CL0018 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0480 - - - 0.0