Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0492 GGTTGGGTGAGGGGGTTGGTCAGATCGGAAGACACCCATGGCTTGCTGGATGGTTACGACATGGAACTGAATCGAGGTGGTGGCCTGTTGGGCTGGGAGAAGGTTTGGGAAATGGGGGCGGTTGCTGGAGAGGAGTTGATGAAGTTGGAGAAAATGCAGGGGATAAATGCTCGCGAAGAGAAAATTCTTGTTTTAGTAAGGCTGAGACCCTTGAACGAGAAGGAGATTATGATGAATGAAGCTGCAGATTGGGAGTGTATCAATGATACTAGTATCTTGTACCGGAATACCTTACGGGAGGGGTCCACATTTCCAAGTGCCTATACTTTTGATAGAGTATTTCGAGGTGATTGCTCTACAAAGCAGGTGTACGAGGAAGGAGCCAGAGAAATTGCATTTTCTGTAGTCAGTGGTATCAACTCAAGTATTTTTGCATATGGTCAGACAAGCAGTGGAAAGACATATACCATGAATGGAATTCTTGAATATTCAGTGGCGGATATATTTGATTACATTAGGAGGCATGAAGAAAGAGCATTCATTGTGAAGTTTTCAGCTATTGAGATATATAATGAAGCTGTTAGAGACCTCCTGAGCACAGATACTAGTCCTCTCAGGCTGCTAGATGACCAGGAGCGAGGGACTATTGTGGAGAAAGTCACTGAGGAAACTTTGAGGGACTGGAACCATTTAAGGGAGCTCATTTCAATTTGTGAAGCTCAACGACGGATTGGAGAGACCTCACTGAATGAGAAAAGTTCTAGATCTCATCAAATTATTAAACTGACAATTGAAAGTTCTGCTCGAGAGTTCTTAGGAAAAGACAATTCAACGACACTTGCTGCTAGTGTGAGTTTTATTGATTTAGCTGGGAGTGAACGTGCAGCTCAAGCATTATCAGCAGGGACGAGACTGAAAGAAGGATGTCACATAAATCGCAGTTTATTGACTCTGGGTACTGTCATTCGCAAATTAAGCAAAGGAAGAAATGGTCATATCAATTACAGAGATTCTAAGCTGACACGAATATTACAGCCCTGCTTAGGTGGCAATGCTAGAACAGCCATCATCTGTACATTGAGCCCTGCAAGAAGTCACGTTGAACAAACTAGAAACACTCTCTTGTTTGCTTGTTGTGCCAAAGAGGTGACAACAAAAGCTCAAGTCAACGTGGTCATGTCTGATAAGGCTTTGGTTAAGCATTTGCAGAAAGAGTTAGCGAGATTGGAGAGTGAGTTGAGAACTCCTGCCCCTGTTTCGTCCAGTTCTGAATATGCAGCCCTACTGAAAAAGAAAGATCTTCAAATTGAGAAGATGGCGAAGGAGATTAGAGAACTCACTAAGCAAAGGGATCTCGCTCAATCCCGAGTTGAAGATTTACTTCGTATGGTTGGACATGATGATGTCTCGAGAAAGGATATCAAAACTAGTTATTCCAAATTGCAAGCAAGGGATGGTTTAGAGTATGAAGGTTCACCATCAGAAACTTCAAGTGTGGCTGATTTTCGTGGTAGAGATATGGGTGGAAAATCCTTTAACAATCCTCATTATTATGATGGAGACAGTGATGATGGAAAGAGGTTCCTTGACTCTCACTCAGGTCAAAGTGGAATTACAACCGCTCTTGCAATAGCAGAAGATTCCGATGACTGCAAGGAAGTTCAATGTATTGAAATGGGGGAGTCAGTCAGAGACAATGGCTTATCACCGCTTGCTGCTGACAATGGTGAATTTAGAGGAATGTCTTTTACTAGGTCAAACGATGGAAATATAATAGGTCATGAATTGATATCAACCCCTGTGAATGGGAACAGAGAAGCACACCAGATTCAAAATAATTCAACAAATGGTCAACCGGAGCAACGACTCCATGATGTAAGAAAGATGGACATTAATTCTATGAGTAGTCCCTACCGCGACGATGCATGTTCAAAGGTTGCTGCTGACATGTCAAGCTCCAGAAGCTTGAAGCTAGCCAGAAGCTGGAGTTGTAGAGCCAATTTCACTACTGAGCTATCACCTGATAGAGGAGAGACCACCCCTCCTCATGGATTTGACAAAAGCTTTCCTGGAAGACCTGAAGGTTTTGAACGGAAACTCCCACAATTAGACTTTGATGGCAGCCTCCCGAGACTTGATTCTCAGTCTTCTATAGGAAGTGCTCGGAGCATCAAAACTTCTGCGGATGAAGACGTTACTCGCTTAGACGCCTTTGTTGCTGGGTTGAAGAAAATGAGAAACTCAGAGTGTGGGAAAGAACTTGCTGAGGGGCAGGTTCTGGAGGATGGACAAGGAATAGATTTCTTAAAGAACACAAATTATGTTGGAGGTGAGGCATTGGCAGATGGATTAGTCACATCGGATTGGAACGAAGAATTTCAGAGGCAGCAGAGGATGATAATTGAGCTTTGGCAAACTTGCAACGTTTCGATTGTCCACAGAACTTACTTTTTCTTGCTCTTCCAAGGCGATCCTGCCGATTCCATTTACATGGAAGTAGAGCTTAGGAGACTGACTTTTCTAAAGCAAACATTTTATTACGGCAATGCAGCTATGGATGATGGCCGGAAAGTCTCTTTTTCTTCAAGTACAAGGGATCTTCGTCGCGAGAGAGAAACATTGAGTAAGTTAATGCAGAAGCGATTCTCAGAAGATGAAAGAAAAAGATTGTTCCAGAAGTGGGGAATTGCGTTGAATTCGAAACGCCGAAGGCTGCAGCTGGTCAGCCAGTTGTGGAGCGATCCGAAGAACATGAACCATGTAACAGAGAGTGCAGCCATTGTTGCCAAGCTTGTGAAGTTTGCTGAGCAAGGACAGGCCCTCAAGGGGAACTTTGGTCTCAGCTTCATTACACCTCCACAAAAAAGTAGATCATTTAGCTGGATAAACAATAGGACTTCTCTTATGTGA 2910 43.33 GWVRGLVRSEDTHGLLDGYDMELNRGGGLLGWEKVWEMGAVAGEELMKLEKMQGINAREEKILVLVRLRPLNEKEIMMNEAADWECINDTSILYRNTLREGSTFPSAYTFDRVFRGDCSTKQVYEEGAREIAFSVVSGINSSIFAYGQTSSGKTYTMNGILEYSVADIFDYIRRHEERAFIVKFSAIEIYNEAVRDLLSTDTSPLRLLDDQERGTIVEKVTEETLRDWNHLRELISICEAQRRIGETSLNEKSSRSHQIIKLTIESSAREFLGKDNSTTLAASVSFIDLAGSERAAQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHINYRDSKLTRILQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRTPAPVSSSSEYAALLKKKDLQIEKMAKEIRELTKQRDLAQSRVEDLLRMVGHDDVSRKDIKTSYSKLQARDGLEYEGSPSETSSVADFRGRDMGGKSFNNPHYYDGDSDDGKRFLDSHSGQSGITTALAIAEDSDDCKEVQCIEMGESVRDNGLSPLAADNGEFRGMSFTRSNDGNIIGHELISTPVNGNREAHQIQNNSTNGQPEQRLHDVRKMDINSMSSPYRDDACSKVAADMSSSRSLKLARSWSCRANFTTELSPDRGETTPPHGFDKSFPGRPEGFERKLPQLDFDGSLPRLDSQSSIGSARSIKTSADEDVTRLDAFVAGLKKMRNSECGKELAEGQVLEDGQGIDFLKNTNYVGGEALADGLVTSDWNEEFQRQQRMIIELWQTCNVSIVHRTYFFLLFQGDPADSIYMEVELRRLTFLKQTFYYGNAAMDDGRKVSFSSSTRDLRRERETLSKLMQKRFSEDERKRLFQKWGIALNSKRRRLQLVSQLWSDPKNMNHVTESAAIVAKLVKFAEQGQALKGNFGLSFITPPQKSRSFSWINNRTSLM 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5578170 5585039 - CaPI482276_02g004920.1 Cam02g0492 120234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0492 969 CDD KISc_CENP_E 61 383 - -
Cam02g0492 969 Coils Coil 392 412 - -
Cam02g0492 969 FunFam Kinesin-like protein 55 414 - -
Cam02g0492 969 Gene3D Kinesin motor domain 53 414 IPR036961 -
Cam02g0492 969 ProSiteProfiles Kinesin motor domain profile. 61 383 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam02g0492 969 PANTHER CENTROMERE PROTEIN E 57 961 IPR027640 GO:0003777(InterPro)|GO:0007018(InterPro)
Cam02g0492 969 Pfam Kinesin motor domain 67 383 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam02g0492 969 MobiDBLite consensus disorder prediction 671 725 - -
Cam02g0492 969 MobiDBLite consensus disorder prediction 485 532 - -
Cam02g0492 969 ProSitePatterns Kinesin motor domain signature. 282 293 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cam02g0492 969 Pfam Domain of unknown function (DUF3490) 792 951 IPR021881 -
Cam02g0492 969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 415 IPR027417 -
Cam02g0492 969 PRINTS Kinesin heavy chain signature 138 159 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam02g0492 969 PRINTS Kinesin heavy chain signature 247 264 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam02g0492 969 PRINTS Kinesin heavy chain signature 333 354 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam02g0492 969 PRINTS Kinesin heavy chain signature 283 301 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam02g0492 969 SMART kinesin_4 59 391 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam02g0492 969 MobiDBLite consensus disorder prediction 709 725 - -
Cam02g0492 969 Coils Coil 429 463 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0492 K11498 - - csv:101213783 1717.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0492 Cam-Chr2:5578170 Cam04g1119 Cam-Chr4:25294441 1.30E-165 dispersed
Cam02g0492 Cam-Chr2:5578170 Cam02g0500 Cam-Chr2:5665003 1.20E-67 proximal
Cam07g0854 Cam-Chr7:21291836 Cam02g0492 Cam-Chr2:5578170 6.30E-142 transposed
Cam11g0011 Cam-Chr11:1664200 Cam02g0492 Cam-Chr2:5578170 8.90E-148 transposed
Cam02g0492 Cam-Chr2:5578170 Cam08g1924 Cam-Chr8:25183213 1.50E-219 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g46 Blo02g00649 . . Bda08g00962 . Bpe12g00095 . . Cmo19g00704 . . . . . . Cpe04g00100 Cpe15g00563 Bhi05g01255 . . . . . . Cla02g00484 Cam02g0492 Cec02g0493 Cco02g0498 Clacu02g0496 Cmu02g0491 Cre02g0824 Cone12ag1189 Cone8ag1236 . Cone10ag1095 . Csa07g00039 . Cme01g01338 Blo04g00541 Blo13g00533 Bda15g01063 Bda14g00581 Bpe15g00840 Bpe05g00313 Bma03g00574 . . . . . Cma19g00692 . Car19g00536 . . . . . . . . . . . . . . . . Lsi11g01139 . Chy01g00742 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004297 2 1 3 1 3 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 43