Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0502 ATGAAGATCCGTTGCGATGTTTGTGATCAAGCTGAGGCCTCTGTTTTTTGTTATGCTGATGAAGCTGCTCTTTGCCATGGTTGCGATCTCCATGTTCATCGCGCTAATAAGCTCGCTGGAAAACACTCTCGATTCTCTTTACTTCACCCGATCAAAAAGGATTCTCCTCGTTGCGATATCTGTCAGGAACGGCGCGCGCTTGTATTCTGTCAACAAGATAGGGCAATTCTTTGCAGAGAATGCGACATTTCGATTCACGAAGCGAACGAACATACACAGAAGCACAATCGATTTCTTCTTACCGGTGTGAAGCTTTCTTCGACTTGTTATTCGTATCAAACATCTTCGTCCTCCAATGGCTGTGATGCCGCCATGGATGTTAAAACTGGAAGCTCCAACGCTTGCAGCAAAAGACCTAAAATGGCCGCGAACGAAATCTCCAGCTCTCATTCCGCTGAAAAAGCTACTCCGTCGACAAGTAATTACAAGGTTGAAGACGGCCAAGCATTAAGCGACGGCGGTTCTTTCTCCACGAGCAGCATATCGGAATATTTAGAGACATTGCCGGGATGGTGCGTGGAGGAGTTTCTTGATCCTTCCGCCGCTGCCAATCGTTTCTGTAAGGTTTGCTAG 633 46.92 MKIRCDVCDQAEASVFCYADEAALCHGCDLHVHRANKLAGKHSRFSLLHPIKKDSPRCDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHNRFLLTGVKLSSTCYSYQTSSSSNGCDAAMDVKTGSSNACSKRPKMAANEISSSHSAEKATPSTSNYKVEDGQALSDGGSFSTSSISEYLETLPGWCVEEFLDPSAAANRFCKVC 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5679070 5679896 - CaPI482276_02g005020.1 Cam02g0502 120244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0502 210 MobiDBLite consensus disorder prediction 145 167 - -
Cam02g0502 210 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
Cam02g0502 210 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270(InterPro)
Cam02g0502 210 CDD Bbox1_BBX-like 58 100 IPR049808 -
Cam02g0502 210 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 201 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cam02g0502 210 FunFam B-box zinc finger protein 21 1 98 - -
Cam02g0502 210 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cam02g0502 210 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Cam02g0502 210 Gene3D Classic Zinc Finger 1 100 - -
Cam02g0502 210 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cam02g0502 210 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cam02g0502 210 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0502 Cam-Chr2:5679070 Cam09g1387 Cam-Chr9:19845159 1.10E-34 dispersed
Cam11g0424 Cam-Chr11:5660017 Cam02g0502 Cam-Chr2:5679070 3.40E-46 wgd
Cam02g0502 Cam-Chr2:5679070 Cam08g1927 Cam-Chr8:25213136 4.40E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51449 PF00643 zf-B_box 2.20E-07 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0502 - - - 0.0