Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0519 ATGAACAGAGCATTACCGGAGATGTTGCATTGTTTGAACACTACCGGGAACTGTCCTGATACTCTCAGTGTTCTTGAGAGGCAGAGAGCTCGTTTGAAATGGCAGCAAGATCAGCTTTTGCAGCAGCAACAGCAGCCATTGAATCAGAGCTGTTTCAATAAGGTTGACTACGGCGGTGGATTTCCGCCGCCGGTGGCTGTTCCAGCGGATCACTTCACCGGGTTTCCTGGGTACATGAGTGGCGGCGGCGGTGGTGGAGGTGGTGGGTTGTCACTTGTTGAGATGGTAATGGGGCAAGTGAAGCCTGACCCTGGGTTGAATGATGGGTGGTCTGAAATGGGAAAGTTTGATCCTTCTTTGTTGTTGAATGCCACTGCTTATGAGCTCAATTCTTCTCTCTCTAGAACCTCCAGCTGCCCGCCGGCGGTGGCGGAGAAGATGGGGTCGGCGGCTGGAAGAGATAGCTTCAAGAAAAGGAAAGCTGAGAAAGTTCACAACACTACTACCACCACCACCACCAACAACAACAACAATAGCAAGGTGACTGTGGAAGAAGATAACAACAGCAGCAGCAAGGAGAAGAGGATCAAAGCAAGTTCAGAAGAAGGAGAATTATCCAAAACCACAGATCAAAACAGTACCAAAAACAACTCAACCACCACAACCACAACAAACAATAACAGAGAAACTTCAGCTGATACCTCAAAAGAAAACTCCAAAGCTTCAGAGGTTCAAAAGCCTGATTACATTCATGTCAGAGCTCGCCGTGGCCAAGCTACTGATAGCCATAGCTTAGCTGAAAGAGCTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCTGGAATGCTCGACGAGATCATAAACTATGTCCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCCATGAAGTTAGCTGCTGTTAATCCAAGGTTGGACTTCAATGTCGATGATCTCTTCAACAAAGAGGTTTTCCCCCCATCTTGCACCACCGCGAACTTCCCGACGATCGGCGGAATGTCATCGGAGATGACAGATCCTTCTTCCTACTTACAATTCAATCCAAATAATCAACAAATGGTCTCGTGTTGTGGATTAGAAATGGGAATCAATACCTCCGATGCCGCGGCTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCGGAAACTTTCCTCGATTCATCTTGCCTCACCCAATTTCAACCCTCTTCAGGGTGGGATGTGGATTTGCAGAATCTGTACAATGTGGGTTTCGATCAAGGAAGATCATCAAACGCCTTTTCATCTCAACCATATACAGGTTCAATTGAAGGAGGCATTATAAAGATGGAAATGTGA 1383 46.2 MNRALPEMLHCLNTTGNCPDTLSVLERQRARLKWQQDQLLQQQQQPLNQSCFNKVDYGGGFPPPVAVPADHFTGFPGYMSGGGGGGGGGLSLVEMVMGQVKPDPGLNDGWSEMGKFDPSLLLNATAYELNSSLSRTSSCPPAVAEKMGSAAGRDSFKKRKAEKVHNTTTTTTTNNNNNSKVTVEEDNNSSSKEKRIKASSEEGELSKTTDQNSTKNNSTTTTTTNNNRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDDLFNKEVFPPSCTTANFPTIGGMSSEMTDPSSYLQFNPNNQQMVSCCGLEMGINTSDAAALRRTISAPVSFPETFLDSSCLTQFQPSSGWDVDLQNLYNVGFDQGRSSNAFSSQPYTGSIEGGIIKMEM 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5910378 5913181 - CaPI482276_02g005190.1 Cam02g0519 120261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0519 460 FunFam Basic helix-loop-helix transcription factor 255 327 - -
Cam02g0519 460 Pfam Helix-loop-helix DNA-binding domain 262 309 IPR011598 GO:0046983(InterPro)
Cam02g0519 460 MobiDBLite consensus disorder prediction 205 232 - -
Cam02g0519 460 Gene3D - 255 329 IPR036638 GO:0046983(InterPro)
Cam02g0519 460 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 150 375 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cam02g0519 460 MobiDBLite consensus disorder prediction 133 248 - -
Cam02g0519 460 SMART finulus 264 314 IPR011598 GO:0046983(InterPro)
Cam02g0519 460 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 256 327 IPR036638 GO:0046983(InterPro)
Cam02g0519 460 MobiDBLite consensus disorder prediction 166 185 - -
Cam02g0519 460 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 308 IPR011598 GO:0046983(InterPro)
Cam02g0519 460 MobiDBLite consensus disorder prediction 233 248 - -
Cam02g0519 460 Coils Coil 22 45 - -
Cam02g0519 460 MobiDBLite consensus disorder prediction 151 165 - -
Cam02g0519 460 MobiDBLite consensus disorder prediction 186 204 - -
Cam02g0519 460 CDD bHLH_AtBPE_like 248 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0519 Cam-Chr2:5910378 Cam08g1357 Cam-Chr8:19864043 6.50E-35 dispersed
Cam01g0745 Cam-Chr1:8247490 Cam02g0519 Cam-Chr2:5910378 1.30E-42 transposed
Cam05g0843 Cam-Chr5:7485589 Cam02g0519 Cam-Chr2:5910378 6.10E-40 transposed
Cam05g2537 Cam-Chr5:33213339 Cam02g0519 Cam-Chr2:5910378 6.50E-39 transposed
Cam05g2849 Cam-Chr5:35551208 Cam02g0519 Cam-Chr2:5910378 7.20E-36 transposed
Cam08g2146 Cam-Chr8:26851961 Cam02g0519 Cam-Chr2:5910378 2.40E-29 transposed
Cam09g0835 Cam-Chr9:8577032 Cam02g0519 Cam-Chr2:5910378 1.50E-37 transposed
Cam10g1693 Cam-Chr10:30933510 Cam02g0519 Cam-Chr2:5910378 1.40E-35 transposed
Cam11g0460 Cam-Chr11:6053509 Cam02g0519 Cam-Chr2:5910378 4.30E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51450 PF00010 HLH 1.30E-06 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0519 - - - 0.0