Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0543 ATGGCGGTTTCCGGTAGCAATTCGACCCAGATTCACCCTTCCGACGAATCTCCCTCCAGTTCTTCCAAAACTTCGCTATCAAACTTGAAAATCTACGCTGCGATCGGTATAATAGCTGCATGTGTGATTGCGGCTTCTGCTCTGATCTTCCTCTGTATCCGTAGAAGTAGAGACTCGAGGAAGCACAAAATGCGGGTGAAACATAGTTCTGGATTGATTCCATTGGTTTCCAAGGAGATCGCTGAGATTAAAGAGCCCGATCGGACTGCAGATTGCGAGAAAGGGGAAGTCGTTAGGGTTGAGAATAAGAAGGAGATTGAGTTCGAGAATGGAGTAGGTAAGAAGAGTCAAGAGAGCGACGTGTCCGGCGGTGGTCGAAGCGACGTGTCGGTGGAGGATCCGAACTTAGGGTGGGGACGGTGGTACAGCTTGAAGGAACTGGAAATAGCGACTGATGGGTTTCTTGAAGAGAATGTGATCGGAGAAGGAGGCTACGGCATCGTGTACAGAGGAGTTTCACCGGACGGCTCCGTCGTCGCCGTGAAGAATCTTCTTAACAATAAGGGTCAAGCAGAGAAAGAGTTCAAGGTTGAAGTAGAGGCTATTGGAAAAGTGAGGCACAAGAACTTGGTGGGTCTGATAGGTTATTGTGCAGATGGAGCACAGAGGATGCTTGTGTATGAATTTATTGATAATGGCAACTTGGAGCAATGGTTACATGGTGATGTAGGGCCTGTTAGTCCTCTAACATGGGATATTAGGATGAAGATTGCTCTTGGAACGGCAAAGGGTTTGGCCTATTTGCATGAGGGTTTAGAGCCTAAAGTTGTTCACCGTGATATAAAGTCCAGCAACATTCTCTTAGATAGAAAATGGAATGCAAAAGTGTCAGATTTTGGACTTGCAAAGCTCTTACAACCCGAAGCCAGCTATGTAACTACTCGTGTAATGGGTACCTTTGGATATGTCTCCCCGGAGTATGCAAGCACAGGCATGCTTAATGAGGGGAGCGATGTATACAGTTTTGGTGTTCTACTTATGGAGATCATCACTGGCAGAAGCCCGATTGACTATTCCAGGCCCCCAGGAGAGATGAACTTGGTGGACTGGTTTAAAGGAATGGTGGCAAATCGACGTGGGGAAGAGGTCGTAGATCCGTTGATTGAGATTCCACCCTCTCCAAGAACTCTAAAGAGAGTGTTGCTTGTTTGTCTACGCTGCATTGATTTGGATGCCAATAAAAGGCCAAAGATGGGGCAAATTGTTCATATGCTAGAGGCAGATGATTTTCCTTATCGTTCAGAGCTTCGATCTGTTCGAGAGAAAGATAACCAGCCTGCTCGTTTAGATGTGCTGAGTAAACTTCCATTGAAGCATGCTGGAATAGATGACACGGAATCAAGAAAGAGATAA 1413 46.28 MAVSGSNSTQIHPSDESPSSSSKTSLSNLKIYAAIGIIAACVIAASALIFLCIRRSRDSRKHKMRVKHSSGLIPLVSKEIAEIKEPDRTADCEKGEVVRVENKKEIEFENGVGKKSQESDVSGGGRSDVSVEDPNLGWGRWYSLKELEIATDGFLEENVIGEGGYGIVYRGVSPDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLIGYCADGAQRMLVYEFIDNGNLEQWLHGDVGPVSPLTWDIRMKIALGTAKGLAYLHEGLEPKVVHRDIKSSNILLDRKWNAKVSDFGLAKLLQPEASYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKGMVANRRGEEVVDPLIEIPPSPRTLKRVLLVCLRCIDLDANKRPKMGQIVHMLEADDFPYRSELRSVREKDNQPARLDVLSKLPLKHAGIDDTESRKR 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6202243 6205875 + CaPI482276_02g005430.1 Cam02g0543 120285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0543 470 ProSitePatterns Protein kinases ATP-binding region signature. 160 182 IPR017441 GO:0005524(InterPro)
Cam02g0543 470 PANTHER OS01G0323000 PROTEIN 20 445 IPR052232 -
Cam02g0543 470 SMART serkin_6 154 425 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g0543 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam02g0543 470 MobiDBLite consensus disorder prediction 1 24 - -
Cam02g0543 470 FunFam Probable serine/threonine-protein kinase At1g01540 134 229 - -
Cam02g0543 470 Pfam Protein tyrosine and serine/threonine kinase 158 425 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam02g0543 470 Gene3D Transferase(Phosphotransferase) domain 1 230 439 - -
Cam02g0543 470 FunFam Putative receptor-like serine/threonine-protein kinase 230 440 - -
Cam02g0543 470 ProSiteProfiles Protein kinase domain profile. 154 433 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam02g0543 470 CDD STKc_IRAK 160 426 - -
Cam02g0543 470 SUPERFAMILY Protein kinase-like (PK-like) 130 426 IPR011009 -
Cam02g0543 470 Gene3D Phosphorylase Kinase; domain 1 129 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0543 Cam-Chr2:6202243 Cam08g2079 Cam-Chr8:26348287 6.90E-141 dispersed
Cam02g0543 Cam-Chr2:6202243 Cam05g0162 Cam-Chr5:1791345 2.40E-141 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84951 PF00069 Pkinase 3.50E-45 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0543 - - - 0.0