Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0547 ATGCCTTCCCGCAGAAGGACCCTTTTGAAGGTCATCATCCTTGGGGATAGCGGGGTGGGGAAGACCTCTTTGATGAACCAATATGTGAATAAGAAGTTTAGTAATCAATACAAGGCCACCATTGGAGCTGATTTTTTGACTAAGGAGGTGCAATTTGAAGATAGACTTTTCACTTTGCAGATATGGGATACAGCAGGCCAGGAACGATTTCAAAGTCTTGGTGTTGCTTTTTACCGAGGTGCTGATTGCTGTGTTCTTGTGTATGATGTCAATTCAATGAAATCATTTGACAGCCTTAACAACTGGCGGGAAGAATTCCTTATCCAGGCAAGCCCTTCCGATCCAGAAAATTTTCCCTTCGTTGTTTTAGGAAATAAAGTTGATGTTGATGGTGGAAACAGTAGAGTTGTTTCAGAGAAAAAGGCACGAGCTTGGTGTGCTTCAAAAGGAAATATCCCATACTTTGAAACTTCTGCCAAAGAAGGCATTAACGTAGAAGAAGCCTTCCAATGCATTGCCAAAAATGCCCTCAAGAGTGGGGAAGAGGAAGAGATATACTTACCCGACACCATCGATGTTGCGGGCAACAATCAGCCAAGATCATCTGGATGCGACTGCTGA 621 43.32 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDSLNNWREEFLIQASPSDPENFPFVVLGNKVDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVAGNNQPRSSGCDC 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6247964 6250652 + CaPI482276_02g005470.1 Cam02g0547 120289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0547 206 SMART ras_sub_4 6 179 - -
Cam02g0547 206 SMART rab_sub_5 9 179 - -
Cam02g0547 206 SMART rho_sub_3 11 179 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam02g0547 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 181 IPR027417 -
Cam02g0547 206 Pfam Ras family 10 176 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam02g0547 206 Gene3D - 2 189 IPR027417 -
Cam02g0547 206 SMART ran_sub_2 14 206 - -
Cam02g0547 206 FunFam Ras-related protein Rab7 1 189 - -
Cam02g0547 206 ProSiteProfiles small GTPase Rab1 family profile. 3 206 - -
Cam02g0547 206 ProSiteProfiles small GTPase Ras family profile. 3 206 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam02g0547 206 ProSiteProfiles small GTPase Rho family profile. 2 180 - -
Cam02g0547 206 PRINTS Transforming protein P21 ras signature 9 30 - -
Cam02g0547 206 PRINTS Transforming protein P21 ras signature 116 129 - -
Cam02g0547 206 PRINTS Transforming protein P21 ras signature 154 176 - -
Cam02g0547 206 PRINTS Transforming protein P21 ras signature 32 48 - -
Cam02g0547 206 PRINTS Transforming protein P21 ras signature 50 72 - -
Cam02g0547 206 CDD Rab7 9 182 - -
Cam02g0547 206 PANTHER RAB FAMILY 1 202 - GO:0005774(PANTHER)
Cam02g0547 206 NCBIfam small GTP-binding protein domain 9 172 IPR005225 GO:0005525(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0547 K07897 - - csv:101218255 416.001
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0109 Cam-Chr2:2258566 Cam02g0547 Cam-Chr2:6247964 3.10E-12 dispersed
Cam02g0547 Cam-Chr2:6247964 Cam09g0199 Cam-Chr9:2703777 3.40E-108 dispersed
Cam02g0547 Cam-Chr2:6247964 Cam09g1291 Cam-Chr9:15641035 6.00E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g580 . . . . . Bpe12g00077 . . Cmo19g00673 . . . . . . . Cpe15g00533 Bhi05g01223 Tan02g0809 . . Hepe02g0515 . . Cla02g00529 Cam02g0547 Cec02g0548 Cco02g0554 Clacu02g0548 Cmu02g0543 Cre02g0874 Cone12ag1146 Cone8ag1194 Cone3ag1157 Cone10ag1166 Lsi10g00673 . . Cme01g01430 Blo04g00507 Blo13g00556 Bda15g00017 Bda14g00548 . . . . . . . . Cma19g00659 . Car19g00502 . Cpe01g00429 . . . . . . . . . . . . . . Lsi11g01095 . Chy01g00795 Cme11g00207
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001330 4 2 4 2 2 2 4 2 2 2 2 2 4 2 2 4 2 4 2 2 2 3 2 1 2 1 2 4 3 2 74