Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0569 ATGGAAGCAGGAGATAGCTTCCGTATCTCTGGTCCGTCCCGTCTCTCCTTCACAGAAACGGGACAGAGGCACATCGAAGCTCGAAAGCGAAGGGATCCGAATTCGGGCCTGCAGAGCGCGTTTCTTCTCTCTGGAACGATGATTAAGCTTTTTAAAGTGAAGGAAAAGCAGAGAGAGATTGCAGCGAATGCCAATGGAAAACCTCCTGTCAAGAAGCAAACTGCTGGAGAATTGCGTCTTCAAAAAGATATCAGTGAATTGAACCTACCAAAAACGTGTAGTATATCGTTTCCTAATGGCAAGGATGACTTGATGAACTTTGAGGTCACTATTCATCCTGATGAAGGATATTATCTAGGCGGTACGTTTCTCTTCTCTTTCCAAGTTTCCCCTGTCTACCCTCACGAGCCACCAAAAGTGAAGTGCAAGACAAAGGTGTATCATCCTAATATTGACTTGGAAGGAAATGTTTGTCTCAATATTTTAAGAGAGGACTGGAAGCCCGTTCTGAATATCAACACTATAATATACGGATTGTTTCATCTTTTCACGCAACCGAATCATGAAGACCCCCTCAACCATGATGCTGCTGCTGTTTTAAGAGATAACCCGAAGATGTTTGAATCCAACGTGAGAAGAGCCATGGCTGGGGGCTATGTGGGACAAACTTACTTCACTCGTTGCATGTAG 690 44.35 MEAGDSFRISGPSRLSFTETGQRHIEARKRRDPNSGLQSAFLLSGTMIKLFKVKEKQREIAANANGKPPVKKQTAGELRLQKDISELNLPKTCSISFPNGKDDLMNFEVTIHPDEGYYLGGTFLFSFQVSPVYPHEPPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNHEDPLNHDAAAVLRDNPKMFESNVRRAMAGGYVGQTYFTRCM 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6487070 6490522 - CaPI482276_02g005690.1 Cam02g0569 120311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0569 229 CDD UBCc 79 213 IPR000608 -
Cam02g0569 229 Pfam Ubiquitin-conjugating enzyme 79 214 IPR000608 -
Cam02g0569 229 SUPERFAMILY UBC-like 67 226 IPR016135 -
Cam02g0569 229 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 75 220 IPR000608 -
Cam02g0569 229 MobiDBLite consensus disorder prediction 1 32 - -
Cam02g0569 229 Gene3D Ubiquitin Conjugating Enzyme 71 229 IPR016135 -
Cam02g0569 229 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 78 214 IPR050113 -
Cam02g0569 229 FunFam NEDD8-conjugating enzyme Ubc12 71 229 - -
Cam02g0569 229 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 147 162 IPR023313 -
Cam02g0569 229 SMART ubc_7 78 220 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0569 K10579 - - csv:101214340 377.481
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1656 Cam-Chr1:30129431 Cam02g0569 Cam-Chr2:6487070 5.80E-90 dispersed
Cam02g0569 Cam-Chr2:6487070 Cam09g1031 Cam-Chr9:10711272 6.30E-23 dispersed
Cam02g0569 Cam-Chr2:6487070 Cam05g1029 Cam-Chr5:9285598 2.40E-22 transposed
Cam02g0569 Cam-Chr2:6487070 Cam01g0210 Cam-Chr1:2398349 2.40E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g555 . . . . . . . . Cmo19g00660 Cmo11g01317 . . . . . Cpe04g00246 Cpe15g00523 Bhi05g01195 . . . . . . Cla02g00546 Cam02g0569 Cec02g0572 Cco02g0583 Clacu02g0570 Cmu02g0566 Cre02g0897 Cone12ag1136 Cone8ag1183 Cone3ag1141 Cone10ag1152 . . . Cme01g01472 . . . . . . . . . . . Cma11g01736 Cma19g00649 Car11g01061 Car19g00493 . . . . . . . . . . . . . . . . Lsi11g01069 . Chy01g00823 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001287 3 4 1 2 2 2 4 2 2 2 2 2 4 1 2 3 2 4 4 2 2 2 2 2 2 1 2 4 6 3 76