Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0598 ATGTGCCGGCGGGAAGGGTTTTTGTGGCAGTTCCGGCAGGTGTTGATCGTCTATTCGAATCGCTTCTCCGGAATTCGAGATACCGCTTTTGTGGAACTGGGTTACTCTTTTCTTCAGGATCTGATCGAGGAGGCTAAACTTCGAACGGTTTGGTGGGCTCTGTGTATTTTTGCGATTTCATACTTTTTGACCCATACTAGTAAGTCAATGTGGATGAATTTACCCCTAGCAATTCTTTTAGTTTCTGCACTACGTATACTGTTCAATGAGGTAGAGTTCCGTAGAAAGGTCCGACCTATTCATCAACAGACATACTTATCTCACCTGGAGAAGAAGCAGTTATCTGTTAATGACTCGCGCCTGTCTTCAGCGGTTCCTCCACCAAGATGGAAAAGGAAAATTGATTCTCCTGCTGTGGAGGCTGCAATGAAGGATTTCATAGATAAAATATTGAAGGATTTTGTGGTTGACTTGTGGTATTCAGAAATAACCCCAGACAAGGAGTTTCCTGGGCAGATACATGCGCTGATCATGGACGCCCTTGGTGAGATAGCAGTTAGGGTGAAAGAGATAAACCTAGTTGACTTGCTCACGAGGGATGTTGTTGATCTAGTAGGTGACCACTTGGACCTTTTTAGAAGAAATCAAGCTGCCATCGGTGTTGATGTTATGGGTACGCTGTCTTCTGAGGAGAGAGATGAAAGGTTGAAACACCATCTTATGGCTTCGAAGGAGCTTCATCCAGCATTGGTGTCTCCTGAGAGTGAGTACAAGGTCCTTCAACGGCTCATGAGTGGAGTGTTGACTTCAGTACTGAGACCAAGAGAAACTCAATGTCCTGTTGTTCGATCCATTGCTCGAGAACTTTTAACATGCTTGGTGATGCAACCTCTTATGAATTTTGCAAGTCCTGGGTGCATAAATGAGTTGATCGAATGTATAGTCCTTGCCACTAGAGCTGAGAATGACTCGGTGATAGGCGGTCAACAACAAACTTATTCTACAGAGCATGACAAAGACCATTCTTCTACTGCTGGATTCGTGCATGATGAAGATTTGAACAAAAGGAACTCATCTTTAAATCCAGGGAATGGTTCAGAGCTCGCTAAAGTTAACAATAAAAAAGAAATAAGCTCAGATTACATGTTCCAGGATGAGCCTTTGCATCTGAGACACGGTGATTGGGGCCGTGCATTGAATGCAGCAACCCAAAGGAGAACTGAAGTTCTTATGCCTGAAAATCTTGAAAACATGTGGACTAAAGGACGGAATTATAAGAAGAAAGAAAATAAGATCATTAAAGTAGGAGATTCTGAGCCTATGGCTACAACAAAGAATTCTGGAACAGGTATCATGCAGCCTGCAACAACGAGGGAGGAAATGTTGACTGACAAGCATCATTCTTCTACTGGGCCAGAAGAAAAGGCAATAGTTAGGAGAACACCTGTAAGACATTCTGATCTCCTTATGACATCCAAACCAAGTGATGAGAACAAAATTGGTTTTCAGTCTTCTCTGGAACTTCAGAAGGATTCATCTATCGATGGGAAGTTTATTGCTAATGTATTAAAGGATGTTGATAATCTTACTCCTGCTAGTGCAACTAAAACTCCACTCAAGAGATCCAATAGTACTTCTGCTTTGAAAACTGAAGTTAGTGTAGAAAAGACTTCTACAGAAGGTGGAAGATCAATTATATCAGATTTCTATGGTCCCAATTTTGGCAAGCATGGTGAAGAGCCCCTTTCTAAGAGTGCCTCGGATATGGTGATCCAAAAAGAAGGACTACTTGTTCCCAAACTTAGGAGTCGGGTAATGGGTGCATACTTTGAGAAGCTTGGTTCAAAATCTTTTGCTGTGTATTCAATAGCTGTTACAGATGCAAATAACAGAACTTGGTTTGTCAAGAGAAGGTACCGAAATTTTGAGCGCCTACATCGGCATCTTAAAGATATTCCTAACTATACACTGCACCTGCCTCCCAAACGAATATTTTCATCAAGCACAGAAGATGCTTTTGTTCACCAACGTTGCATTCAACTTGACAAATATTTGCAGGAGCTATTATCAATTGCAAATGTTGCTGAGCAGCATGAAGTATGGGATTTTTTAAGTGTTTCCTCAAAGAACTATTCGTTTGGAAAATCTTCCTCAGTGATGAGAACATTAGCAGTCAATGTGGATGATGCTGTGGATGACATTGTACGTCAGTTTAAAGGGGTTTCAGATGGTTTCATGCGTAAAGTTGTTGGTTCAACCTCACCTGATGAAGCTTGTGCCTCATCAAATTATGACCGGAAGTTTTCATTTAATTCAGCAGACTTAAGCAGACATGTTTCTGCACAATATAATTTAGAGATAGCTAATAACATTTCTGACGAGGAAGGTGAGCGAATTGAAAGTCAAAATCGTGAAAAGGTTAGTGGATGGCATTCAGACAATGAATTAAACTCTAAGAGCTTTCCCCCTCGTGTGATCAAACGTGGTGAAGAGTCAGATAAATTAGTTGTCGACAAGAAGAATGATCTAGAATTGAGGTCTGGGGCCAGCCATGGAGGATTTTCACAAACGTCGTATCATATGGAAGATCCAGAAGGAATGCCACCAGAGTGGACTCCACCTAATGTCAGCGTACCTCTTCTAAATCTGGTTGACAAGATATTTCAGCTTAACAGGAGAGGCTGGATAAGGAGGCAGGTCCTTTGGATATCAAAACAAATATTACAGTTAATTATGGAAGATGCTATTGATGACTGGATTGTCAGGCAAATACACTGGCTACGGAGGGAGGACATCATTGCTCAGGGTATTCGATGGGTCCAAGATGTTCTCTGGCCCAATGGAATATTCTTCATACAATTGAGGAATGCTCAAAGTGAAGATGATGATTCTCAATCTACTACTAGCCGAGCTGATGGAAGCAAGATCCCCAAGCCTGGATCTTTTGAGCTGCAGCTCGAGGCTGCTCGCAGAGCTAGCGATGTCAAGAAAATGCTTTTTGCTGGGGCTCCAACACCATTGGTAAGCTTGATAGGGCACAAGCAATACAAAAGATGTGCAAAAGATATTTACTACTTCACTCAGTCTACCATCTGTGTGAAGCAACTTGGGTATGGATTACTCGAACTATTACTCGTATCACTTTTCCCCGAGCTACGGAATTTAGTTTTGGAGATTCATGACAAGTCGCACGTCTCGCAACCAGTTTAG 3210 41.93 MCRREGFLWQFRQVLIVYSNRFSGIRDTAFVELGYSFLQDLIEEAKLRTVWWALCIFAISYFLTHTSKSMWMNLPLAILLVSALRILFNEVEFRRKVRPIHQQTYLSHLEKKQLSVNDSRLSSAVPPPRWKRKIDSPAVEAAMKDFIDKILKDFVVDLWYSEITPDKEFPGQIHALIMDALGEIAVRVKEINLVDLLTRDVVDLVGDHLDLFRRNQAAIGVDVMGTLSSEERDERLKHHLMASKELHPALVSPESEYKVLQRLMSGVLTSVLRPRETQCPVVRSIARELLTCLVMQPLMNFASPGCINELIECIVLATRAENDSVIGGQQQTYSTEHDKDHSSTAGFVHDEDLNKRNSSLNPGNGSELAKVNNKKEISSDYMFQDEPLHLRHGDWGRALNAATQRRTEVLMPENLENMWTKGRNYKKKENKIIKVGDSEPMATTKNSGTGIMQPATTREEMLTDKHHSSTGPEEKAIVRRTPVRHSDLLMTSKPSDENKIGFQSSLELQKDSSIDGKFIANVLKDVDNLTPASATKTPLKRSNSTSALKTEVSVEKTSTEGGRSIISDFYGPNFGKHGEEPLSKSASDMVIQKEGLLVPKLRSRVMGAYFEKLGSKSFAVYSIAVTDANNRTWFVKRRYRNFERLHRHLKDIPNYTLHLPPKRIFSSSTEDAFVHQRCIQLDKYLQELLSIANVAEQHEVWDFLSVSSKNYSFGKSSSVMRTLAVNVDDAVDDIVRQFKGVSDGFMRKVVGSTSPDEACASSNYDRKFSFNSADLSRHVSAQYNLEIANNISDEEGERIESQNREKVSGWHSDNELNSKSFPPRVIKRGEESDKLVVDKKNDLELRSGASHGGFSQTSYHMEDPEGMPPEWTPPNVSVPLLNLVDKIFQLNRRGWIRRQVLWISKQILQLIMEDAIDDWIVRQIHWLRREDIIAQGIRWVQDVLWPNGIFFIQLRNAQSEDDDSQSTTSRADGSKIPKPGSFELQLEAARRASDVKKMLFAGAPTPLVSLIGHKQYKRCAKDIYYFTQSTICVKQLGYGLLELLLVSLFPELRNLVLEIHDKSHVSQPV 1069
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6806360 6817006 - CaPI482276_02g005980.1 Cam02g0598 120340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0598 1069 SMART PXA_3 136 319 IPR003114 -
Cam02g0598 1069 MobiDBLite consensus disorder prediction 334 356 - -
Cam02g0598 1069 Gene3D - 602 716 IPR036871 GO:0035091(InterPro)
Cam02g0598 1069 Pfam PXA domain 136 313 IPR003114 -
Cam02g0598 1069 SUPERFAMILY PX domain 607 710 IPR036871 GO:0035091(InterPro)
Cam02g0598 1069 Pfam Sorting nexin C terminal 895 1029 IPR013937 -
Cam02g0598 1069 MobiDBLite consensus disorder prediction 532 554 - -
Cam02g0598 1069 MobiDBLite consensus disorder prediction 330 368 - -
Cam02g0598 1069 CDD PX_SNX19_like_plant 601 705 - -
Cam02g0598 1069 MobiDBLite consensus disorder prediction 847 866 - -
Cam02g0598 1069 PANTHER PX SERINE/THREONINE KINASE PXK 38 1064 IPR051837 -
Cam02g0598 1069 ProSiteProfiles PXA domain profile. 136 319 IPR003114 -
Cam02g0598 1069 Pfam PX domain 629 706 IPR001683 GO:0035091(InterPro)
Cam02g0598 1069 SMART PX_2 599 707 IPR001683 GO:0035091(InterPro)
Cam02g0598 1069 ProSiteProfiles PX domain profile. 599 711 IPR001683 GO:0035091(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0598 K17925 - - csv:101222929 1875.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0598 Cam-Chr2:6806360 Cam09g0201 Cam-Chr9:2710809 8.30E-134 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g500 . . . . . Bpe12g00069 . . Cmo19g00647 Cmo11g01333 . . . . . Cpe04g00257 Cpe15g00511 Bhi05g01163 . . . Hepe02g0556 . . Cla02g00568 Cam02g0598 Cec02g0598 Cco02g0609 Clacu02g0594 Cmu02g0592 Cre02g0921 Cone12ag1120 Cone8ag1165 . . . Csa07g00810 . Cme01g00015 . . Bda15g00024 . . . . . . . . Cma11g01777 Cma19g00630 Car11g01074 Car19g00481 . . . . . . . . . . . . . . . . Lsi11g01041 . Chy01g00019 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009346 0 3 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34