Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0600 ATGCTACTCGCTTCTTCAGCCGCCATGGGAGAGACCTTGGCCATGGATTCTACCTTCATTCAACCCATCGAGCACCGCCCCAAGCTCGAACCCCTCGACTCCATTGACGAACAAGTTCCAACCATAGATCTCTCCATCTCCCTCTCTCGCACCACCCATCAGCTCGTCTCTGAAATAGCCTCTGCTTGCCAGAACTGGGGTTTCTTCCAGGTAATCAACCATGGAGTTCCCCACGAGCTGCTCGCGCGTATTGAAAAAGCTGCCAAGTTGTTTTTTGATCAGCCAATGGAGGAGAAGAGGAAGGTGAAGAGAGATGCAGCTAATGCTATGGGGTTTCATGACGGTGAGAATACCAAAAACGTTAGGGATTGGAAGGAAGTGTTTGACTTCTTGGTTAAGGATGGGACGTTGATTCCGGCTTCGCATGAACCAAATGACAAGGAATTGAGGGTATTGTGTAATCAGTGGCCGCAATATCCCCCTGGGTTTAGGGAAACATGCCAGGAGTATGCAAGAGAGTTGGAATTGCTAGCTCATAAGCTACTGAGGCTGATTTCTTTGAGTCTAGGCCTAGCTGGTGCTGATGGATTGAAGGGCTATTTCAACGATGAGCAAACGAGCTTGGTGAGGTTGAATCACTATCCTCCATGCCCGTCTCCGGATCTCGTGCTTGGCGTTGGCCGTCACAAAGATGCTGGTGCCTTGACAATCCTTGCTCAAGATGGTGTTGGAGGGCTGCAAGTGAAGAGAAAATCAGATGGAGAATGGATTCCTGTCAAACCAATCCCAAATGCATATATTGTCAACATTGGTGATGTTGTTCAAGTTTGGAGCAATGACAAATATGAAAGTGTGGAGCACAGGGTGGTGGTGAATACTGAGAAAGAAAGGTTTTCTTTTCCATTCTTCTTCTTTCCAGCTCACCATATGATGGTGAAACCATTGGAGGAGCTTGTGAATGAGCAAAACCCACCAAAATACAGAGAATACAACTTCGGAAAGTTCTTTGCTTCTAGAAACCGCAGTGATTTCCAGAAGCAAAAAGTGGAAAACATCCAAATTGACCATTTTAGGCTGCCTTTGTGA 1086 46.78 MLLASSAAMGETLAMDSTFIQPIEHRPKLEPLDSIDEQVPTIDLSISLSRTTHQLVSEIASACQNWGFFQVINHGVPHELLARIEKAAKLFFDQPMEEKRKVKRDAANAMGFHDGENTKNVRDWKEVFDFLVKDGTLIPASHEPNDKELRVLCNQWPQYPPGFRETCQEYARELELLAHKLLRLISLSLGLAGADGLKGYFNDEQTSLVRLNHYPPCPSPDLVLGVGRHKDAGALTILAQDGVGGLQVKRKSDGEWIPVKPIPNAYIVNIGDVVQVWSNDKYESVEHRVVVNTEKERFSFPFFFFPAHHMMVKPLEELVNEQNPPKYREYNFGKFFASRNRSDFQKQKVENIQIDHFRLPL 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6833200 6835459 + CaPI482276_02g006000.1 Cam02g0600 120342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0600 361 SUPERFAMILY Clavaminate synthase-like 19 344 - -
Cam02g0600 361 Gene3D - 6 346 IPR027443 -
Cam02g0600 361 Pfam 2OG-Fe(II) oxygenase superfamily 207 306 IPR044861 -
Cam02g0600 361 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 205 306 IPR005123 -
Cam02g0600 361 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 15 339 - -
Cam02g0600 361 PRINTS Isopenicillin N synthase signature 294 312 - -
Cam02g0600 361 PRINTS Isopenicillin N synthase signature 229 250 - -
Cam02g0600 361 PRINTS Isopenicillin N synthase signature 59 76 - -
Cam02g0600 361 FunFam Gibberellin 20 oxidase 1 12 345 - -
Cam02g0600 361 Pfam non-haem dioxygenase in morphine synthesis N-terminal 39 158 IPR026992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0600 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0600 Cam-Chr2:6833200 Cam05g0697 Cam-Chr5:6120762 4.10E-53 dispersed
Cam02g0600 Cam-Chr2:6833200 Cam02g0602 Cam-Chr2:6861444 2.70E-121 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g494 . . . . . . . . . Cmo11g01335 . . . . . Cpe04g00259 . . . . . . . . Cla02g00570 Cam02g0600 Cec02g0600 Cco02g0611 Clacu02g0596 Cmu02g0594 . . . . . . . . Cme01g00017 . . . . Bpe15g00885 . . . . . . . . Car11g01076 . . . . . . . . . . . . . . . . . Lsi11g01040 . Chy01g00022 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000982 2 2 0 0 1 2 2 2 3 3 2 2 3 2 3 3 2 4 3 3 4 2 3 1 3 4 5 3 3 12 84