Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0623 ATGTTTGGCCAAGATCAGCCTTGGTTGAACACCTTCTCTTCTACCCATTTTTGGCCTAGGTGTCATGTAGCTGAGCCTTGGCCTTTACCAGCCCCGTTTGAATTCAAATCAAACTACGGAGCTCTCTTTATTGGCGCTCGAAATTCTCTCTCAAGAGCCCATCACTGGAAAATCGAAGAGAACGAGCTTCAGTTCAGCGACGGAATCCTACAACAGAAAATGGTGGAATCGAACCTGACTTACGAGGAATGCCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGGAAGAGCTTAATCTGAACAAACTTGCCGATGCTCTGAAATTTTCCAGCCCTAAATCCTCTCCGACCAAACAGCTAAAGCGTCCTCGTCAGCCACTCGATAAGTCGTCTTTCAGTGTGAGAAGGTCTAGCCGGTTTGCCGATAAGCCCCCTCCGAACTATAAGGAGGTGCCCATTGAACCACTTCCAGGTATAAGAAGGACTTATCAAAGGAGAGATTTGCTGAATCGGATTTATGCTTCACATGAAGAAAGGCAATATGCTATTGACAGAGCAAGAGACCTTCAATCTAGCCTGGAATCTAGGTACCCCAGTTTTGTGAAGCCCATGCTTCAATCACATGTCACAGGGGGATTTTGGCTGGGTCTACCAGTTCAATTTTGCAAGACACACCTTCCCCTTGAGGATGAAATGCTAACTCTGGTTGACGAGGATGATAATGAGTTCCAAACGAAATACCTTGCCGATAAAACAGGTCTCAGTGGTGGTTGGAGAGGATTTTCCATTGATCATCAGTTAGTAGATGGGGATGCTTTGGTGTTTCAGTTAACTAAGCCAACTGAATTCAAGGTATATATCATCAGAGCATACAATTTAGAAGACAGAGAAGATACCAATGAGGATTCTGATGTCACCCAATTGGAAAAAAGTGGCAAAAGAAATACCAAATCATCAGGGCATAAATCCAGGGCAAATAATTCTGAGGATAAAGGAGATAACGGGCAAATAAATCCAAAGATAAAGCAGATAACGGCGCGGATTTGGATGTCCCCGAGCTGGAAAAAAGTGGCAAAAGAATTACTAGATCATCAAGTAAAGGGAAAAAGTAACTCAAGGTTTTCCTTTGGCACAAGGATTATTATAAGTATCCCTATCCAAGGCTTTCCAAACAAAAAGGGTTTAGGCATTTTCCGATCAGAAATGGCGTCTCTCATGGCGGTCCGGCGTGCTCGAACCCCCATTCTTATCTCCTCCTTCTTCAAGGTACGGTCTCCTCTCCCTTCTCGTTTCACCTTCACTTGTGGAAATCAGACAGATACCCTAATCAAAGCCCTAAGCACCTCGGCAATCCGTAACGATTTCTCAAATTTTCCTCCGCCGCAACAACCTTCTTCGTCTGACCCTCGACATCGTCAAGCCCAGTGGGGCTCGCCGAGCCAGGTTCATCCTCCGAGTGGAAATTTTAATAACCAGTCGTTCTCGGAGTTTCAGAATCGCGATTATGTTCAACAGGGAAGCCCTAGTAATCAATTGAAGTATCGGAGTCAGAATCAGAGCCCTCAACCCAATCCTGGATTTTCCCGGCAGGGTCAGAGCTATACTCAACCCGGTAACCCTAATTCGTGGAATCCTCCAAATCAAAGCTACCCGCAGTGTCAAAATCCTTCGCAGGCGAACCCTCAAAATTTCAATTATCAGCAACAAAGAGGCCCTAACCAATGGAACAATCAAAAACAGGGATATCCACAATTTGGAAGGCCTGAACAGCGTAACCCACAAGTAGAGAATTCTAATCAGTTGAATAATCAGGCTGGGATTCAAAGGCAAGGTGCTCAAAATCAAGCACCAAATGCCCTTGTATCTCCTATTGATGAACTGCGGCGCCTTTGTGGAGAGGGGAAGATGAAAGAAGCTGTTGAATTATTGAAAGAAGGTGTTAAAGCTGATGCTGATTGTTTCCATTTGTTGTTTGAACTATGTGGGAAATCCAAGTCATTTGACAATGCTAAAGTAGTTCATGATTACTTTTTACAGTCAACTTGTAGAAGTGATCTGCAATTGAATAATAAAGTGCTTGAGATGTATGGGAGATGTGGAAGCATGAGTGATGCACGGAGAGTGTTCGACTATATGCCTGATAGAAATATTGATTCTTGGCATTTTATGATGAAAGGATATGCTGATAATGGATTGGGTGATGAGGGTCTGGAGTTATTTGAGAATATGAAGCAGCTAGGGTTGCAACCCGATTCACAAACTTTCCTTTTTGTTATGTCAGCTTGTGCTAGTGCGAATGCTGTGGAAGAAGGATTTCTGTACTTTGAGTCAATGAAAAATGATTATCATATTACCCCAGACATGGATCATTATTTGGGGCTTTTAGGTATTCTTGGAGAACCAGGACACATTAATGAGGCTTTCGAGTATGTTAAGAAACTGCCAATGGAGCCCACAGTTGAGGTATGGGAGACTTTAAAGAACTATGCTAGAATTCATGGAGATGTTGATCTTGAGGACTATGCAGAGGAGCTAATTGTTGATCTGGACCCGACAAAAGCTGTCTCTAATAAGATATCGACGCCACCTCCCAAAAAACGGTCTGCAATTAGCATGCTTGATGGGAAGAACAGGATTAGTGAATTCAGAAATCCAACTCTCTACAAAGATGATGAAAAATTAAAGGCTTTGAAGGCAATGAAAGAACAAGGGTATGTGCCAGATACTAGATATGTTCTTCACGATATCGATCAAGAGGCCAAAGAGCAGGCATTGCTGTATCATAGTGAACGATTGGCAATCGCATATGGATTGATCAGTACTCCGGCACGAACGCCTCTTAGGATCATTAAGAACCTAAGGATCTGCGGTGATTGTCATAATGCCATCAAAATCATGTCTAGAATTGTTGGGAGAGAGTTAATTGTAAGGGACAACAAACGGTTCCATCATTTTAAGGATGCTTGA 2970 43.2 MFGQDQPWLNTFSSTHFWPRCHVAEPWPLPAPFEFKSNYGALFIGARNSLSRAHHWKIEENELQFSDGILQQKMVESNLTYEECRRQRLEENKKRMEELNLNKLADALKFSSPKSSPTKQLKRPRQPLDKSSFSVRRSSRFADKPPPNYKEVPIEPLPGIRRTYQRRDLLNRIYASHEERQYAIDRARDLQSSLESRYPSFVKPMLQSHVTGGFWLGLPVQFCKTHLPLEDEMLTLVDEDDNEFQTKYLADKTGLSGGWRGFSIDHQLVDGDALVFQLTKPTEFKVYIIRAYNLEDREDTNEDSDVTQLEKSGKRNTKSSGHKSRANNSEDKGDNGQINPKIKQITARIWMSPSWKKVAKELLDHQVKGKSNSRFSFGTRIIISIPIQGFPNKKGLGIFRSEMASLMAVRRARTPILISSFFKVRSPLPSRFTFTCGNQTDTLIKALSTSAIRNDFSNFPPPQQPSSSDPRHRQAQWGSPSQVHPPSGNFNNQSFSEFQNRDYVQQGSPSNQLKYRSQNQSPQPNPGFSRQGQSYTQPGNPNSWNPPNQSYPQCQNPSQANPQNFNYQQQRGPNQWNNQKQGYPQFGRPEQRNPQVENSNQLNNQAGIQRQGAQNQAPNALVSPIDELRRLCGEGKMKEAVELLKEGVKADADCFHLLFELCGKSKSFDNAKVVHDYFLQSTCRSDLQLNNKVLEMYGRCGSMSDARRVFDYMPDRNIDSWHFMMKGYADNGLGDEGLELFENMKQLGLQPDSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPDMDHYLGLLGILGEPGHINEAFEYVKKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNKISTPPPKKRSAISMLDGKNRISEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDA 989
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7155975 7164114 + CaPI482276_02g006230.1 Cam02g0623 120365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0623 989 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 717 751 IPR002885 -
Cam02g0623 989 ProSiteProfiles B3 DNA-binding domain profile. 201 292 IPR003340 GO:0003677(InterPro)
Cam02g0623 989 MobiDBLite consensus disorder prediction 506 598 - -
Cam02g0623 989 MobiDBLite consensus disorder prediction 454 494 - -
Cam02g0623 989 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 626 774 - -
Cam02g0623 989 SUPERFAMILY DNA-binding pseudobarrel domain 194 291 IPR015300 -
Cam02g0623 989 Pfam PPR repeat family 717 764 IPR002885 -
Cam02g0623 989 Gene3D - 176 293 IPR015300 -
Cam02g0623 989 Coils Coil 79 106 - -
Cam02g0623 989 Pfam B3 DNA binding domain 201 290 IPR003340 GO:0003677(InterPro)
Cam02g0623 989 CDD B3_DNA 199 290 IPR003340 GO:0003677(InterPro)
Cam02g0623 989 Gene3D Tetratricopeptide repeat domain 626 782 IPR011990 GO:0005515(InterPro)
Cam02g0623 989 MobiDBLite consensus disorder prediction 299 338 - -
Cam02g0623 989 PANTHER OS07G0578800 PROTEIN-RELATED 629 856 IPR045215 GO:0003723(InterPro)|GO:0003723(PANTHER)|GO:0009451(PANTHER)|GO:0009451(InterPro)|GO:0043231(PANTHER)
Cam02g0623 989 SMART B3_2 201 292 IPR003340 GO:0003677(InterPro)
Cam02g0623 989 MobiDBLite consensus disorder prediction 110 155 - -
Cam02g0623 989 Pfam DYW family of nucleic acid deaminases 905 988 IPR032867 GO:0008270(InterPro)
Cam02g0623 989 NCBIfam pentatricopeptide repeat 720 753 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0623 Cam-Chr2:7155975 Cam01g2557 Cam-Chr1:37157453 2.60E-65 dispersed
Cam03g1089 Cam-Chr3:20394662 Cam02g0623 Cam-Chr2:7155975 8.10E-69 transposed
Cam07g1186 Cam-Chr7:26247620 Cam02g0623 Cam-Chr2:7155975 5.90E-121 transposed
Cam11g0277 Cam-Chr11:4269404 Cam02g0623 Cam-Chr2:7155975 1.30E-18 transposed
Cam02g0623 Cam-Chr2:7155975 Cam05g1160 Cam-Chr5:10820580 4.20E-33 wgd
Cam02g0623 Cam-Chr2:7155975 Cam08g2048 Cam-Chr8:26071172 2.20E-56 wgd
Cam02g0623 Cam-Chr2:7155975 Cam09g1866 Cam-Chr9:33247436 7.10E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51458 PF14432 DYW_deaminase 7.10E-33 CL0109 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0623 - - - 0.0