Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0641 ATGCTCCTGCAACCAGAAGTTGTCATTCCTCAACCCATAACTTCGATGGTACCCACTCACGTCTCTGCTTCGACTCAAGGAGTCTCCGCGTCAGAAGGAGTCTCCACAGGCGTAAGCAGCAATGCCAGTGTGTCAGAAGTTACTACACAATGCTATCAACTTCTTGATAGGCAGTTTGCTCCAAATCAAGTTGGAAATCAGAACAATCGACGACCACAGTTTTCTGGAAGTTTTCCTATAAATCAGAATACAATCTCTTCGATTCAGCCTTCAAATCAGGCTTTCGTGGCAGCTCATAATTCAAATCCGTTTGTGTCAAGTCCTGAGTCTATTATTGGTCCAAATGGCAGAGTGGTGCTAAAGGGGGAGCACCATGATGGGTTGTACAAGATTGAACCAATCGGGGCCATTGGTAGTGCTTCAAGCCAATTAGTAACAACAACGGCTGTTGGCTTTCACACTTTGGTTCCCAACACCACGAATATTAGATCTGGAGAAGAGGGAGAAGAAGATCAGATCAAATCTGAAGCTCCTTCTCCTTCGCTCACTTGGCGAAGCATAGCGACAATGGCCCTCGTTCTTCATTGGGAGCTGACTACGACAATGGGAAAGGCACGACGACGACGACGACGATCAGAGGGGCAAAAGAGTAATAACGCCCGATGTTATGAGGGCAAGATTGGAATAAAGCAACCTTCACCTCTTCGAGACTTTCTTCTTCTGCCTTTCTGCGTTGCTCTGCGGAATACGGGGGAAGAAGTACGTCATCGGCTCCGACGACCTTTAAACTGCCTTAGTTCGGCGACTCACGGTGGTCATTCGTGCCCTGGTTTACATCATCACCTAGCTATGGAGATTGCTCCGGCGGCTGCGCCTTCGATCGACAGAGATGCTGCCAACGATACCGCCTCTGTTGATGCAGTTCAAGCATCGTCTTCATCGCCGGATTCTGTACCAGGGAACGAGGCGAACTTGTCTACGTCTTTTCCTGGACCTAAGTATGATGACGATGAAGAGGAAGAGGACGTCTGCCGGATCTGTAGGAACCCTAGAGATGCGGATAACCCGCTAAGTTATCCCTGCGCTTGCAGCGGCAGCATCAAGTTTGTTCACCAGGATTGTCTCCTTCAATGGCTGAATCACAGCAACGCCCGTCAGTGCGAGGTTTGCAAACATGCATTTTCCTTCTCCCCTGTTTATGCCGAGAATGCTCCATCAAGGCTACCTTTTCAGGAATTTATTTTTGGAATAGCAATGAAAGCTTGCCATGTCCTGCAATTCTTTTTACGTTTAAGTTTTGTGCTCTCTGTTTGGCTCCTCATCATACCTTTCATTACATTTTGGATATGGCGGTTGGCTTTTGTGAGAAGTTTTGGGGAAGCTCAGAGATTATTCTTGAGTCACTTGTCTGCTACCGTTGTTCTTACTGATTGTCTTCATGGCTTCCTACTTTCTGCTAGCATTGTATTTATATTCCTTGGAGCTACCTCCTTGAGAGATTACTTCAGGCATTTACGGGAACTTGGAGGTCAGGATGGCGAGCGAGAAGATGATGCAGATCGAAATGGAGCTCGTGCGGTAAGAAGACCTCCGGGACAAGCTAATAGAAATTTTGCTGGTGACGCTAATGGTGAAGATGCGGGTGGAGCCCTAGTACTTGCTGGAGCAGGTCAAATGATTAGGAGGAATGCAGAAAATGTTGCTGCTCGATGGGAGATGCAGGCTGCTCGTCTTGAAGCTCACGTCGAACAGATGTTTGATGTGGATGATGCTGATGGTGCAGAAGATGTGCCCTTTGATGAGCTTGTTGGCATGCAGGGTCCTGTGTTTCACTTAGTTGAGAATGCATTCACAGTTTTAGCCAGCAATATGATATTTCTTGGTGTTGTTATCTTTGTGCCCTTTACACTAGGTCGGATCATACTTCATTATGTATCATGGCTTTTCTCTTCAGCCAGTGGTTCAGTTTTCTCAACAGTGATGCCACTTACAGAGTCAGCTCTCTCGTTGGCAAATATTACATTGAAAAATGCATTGACAGCTGTTGCAAATTTGTCATCAGATGGTAAAGAAAGTGGTCTACTTGATCAGGTTGCAGAAATGTTGGAAGTCAACTCCAGTACGCTAAACAATGTCTCAAACAACATAACGGCTCCACTTTCGGTTGATCTTTTGAAAGGGGTAGCCACTGGAGGTTCGAGGCTTTCTGATGTTACAACTCTTGCTGTAGGCTACATATTTATATTTTCTTTAGTTTTCTTCTATCTTGGGACTATTGCTTTGATTCGATACACACGAGGAGAGCCTTTGACTATGGGGAGGTTGTATGGCATTGCATCTGTAGCCGAGGCCATCCCTTCTCTCCTTAGGCAGTTCATGGCAGCAATGAGGCATTTGATGACCATGGTTAAGGTTGCTTTCCTATTGGTCATAGAACTTGGGGTATTCCCCTTGATGTGTGGTTGGTGGCTTGATATTTGTACTGTAAGGATGTTTGGAAAGTCAATGGCTCAGCGTGTTCAGTTCTTTTCAATTTCTCCTCTAGCAAGCTCATTGGTTCACTGGGCTGTTGGCATTGTATATATGCTACAAATAAGCATATTTGTCAATCTCCTCCGAGGGGTTTTGCGCAGTGGAGTTTTGTACTTTCTTCGCGATCCAGCTGACCCAAATTATAACCCTTTCCGAGATTTAATCGACGATCCTATGCACAAGCATGCTCGCAGGGTTCTTCTATCTGTCGCAGTGTATGGAAGTTTAATTGTAATGCTGGTGTTCTTACCTGTCAAACTTGCTATGAGGATGGTGCCCTCCATTTTTCCTCTTGATATATCGGTATCAGATCCCTTCACAGAGATTCCAGCTGACATGCTTCTGTTTCAAATATGCATTCCTTTTGCTATCGAGCATTTTAAATTGAGAACAACAATCAAATCCCTTCTTCACTGCTGGTTTACTGTAGTCGGTTGGGCCCTTGGTTTAACAGATTATTTACTTCCCAGAACTGAAGAAAATGTCGGCCAGGAAAATGGGAATGGAGAGCCTGGGTTGCAAGAAGAACTGCAGGTGGTACACCTAGGTGGACAGGATCAGGCTTTGGTGGCTCATAATGCAGCTAACGACCCAAATCAAGTTCCTGCATCTGGAAACTTGAGTAATGAGGAGTATGATAACGAAGAGCAGACTGATTCAGAGAGGTATAGCTTTGCTCTCCGGATTGTCCTTTTGTTGGTTGTGGCATGGATGACTCTTCTTGTCTTCAACTCAGCATTGATAGTGGTACCAACTTCACTTGGACGGGCACTTTTCAATGCCATTCCGCTTCTTCCCATCACACATGGAATCAAGTGCAATGATATGTATGCTTTTGTCATCGGGAGCTACGTTATTTGGACAGCAATAGCTGGTGCCAGATATTCCATTGAATATGTCAGAGCAAGGAGGGTGACAGTTTTGTTGGGCCAGATATGGAAATGGTTTGCCATTGTCGTCAAGAGTTCTGCACTTTTGTCAATTTGGATCTTTCTCATTCCAGTATTGATTGGCTTGTTATTTGAGCTTCTGGTCATCGTGCCTATGCGAGTTCCGGTGGATGAAAGCCCAGTTTTCCTCTTGTATCAGGATTGGGCATTGGGCTTAATTTTTCTTAAGATATGGACTAGACTGGTAATGTTAGATCATATGATACCACTGGTGGATGACAGTTGGAGGGTAAAGTTTGAAAGAGTTAGAGAAGATGGCTTCTCCAGGCTGCAAGGACTCTGGGTTCTGCGGGAAATAGTTGTGCCAATTATAATGAAGTTACTGACAGCACTATGCGTACCATATGTACTAGCTAGAGGAGTATTTCCCGTATTTGGGTACCCGCTGATCGTCAACTCGGCTGTTTATCGATTTGCTTGGATTGGATGCCTTTGTGTTAGCATGTTGTATTTCTGTGCCAAGAGATTTCATGTTTGGTTCACCAACCTTCACAATTCCATTCGCGACGATCGTTATCTCATTGGTCGTCGACTCCATAACTTTGGTGAAGACTCCGAAGAGAAGCAAACCGATGTGGGGACTTCATCCGAGACACAAAATGCACATCTGCTGGGCACCGGCCATGCAGCAGTGGCTGGTGAAGGATTGCGGCTGAGACGTGTGGTTGGTAACTGA 4158 45.43 MLLQPEVVIPQPITSMVPTHVSASTQGVSASEGVSTGVSSNASVSEVTTQCYQLLDRQFAPNQVGNQNNRRPQFSGSFPINQNTISSIQPSNQAFVAAHNSNPFVSSPESIIGPNGRVVLKGEHHDGLYKIEPIGAIGSASSQLVTTTAVGFHTLVPNTTNIRSGEEGEEDQIKSEAPSPSLTWRSIATMALVLHWELTTTMGKARRRRRRSEGQKSNNARCYEGKIGIKQPSPLRDFLLLPFCVALRNTGEEVRHRLRRPLNCLSSATHGGHSCPGLHHHLAMEIAPAAAPSIDRDAANDTASVDAVQASSSSPDSVPGNEANLSTSFPGPKYDDDEEEEDVCRICRNPRDADNPLSYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPSRLPFQEFIFGIAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHLSATVVLTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQDGEREDDADRNGARAVRRPPGQANRNFAGDANGEDAGGALVLAGAGQMIRRNAENVAARWEMQAARLEAHVEQMFDVDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFTLGRIILHYVSWLFSSASGSVFSTVMPLTESALSLANITLKNALTAVANLSSDGKESGLLDQVAEMLEVNSSTLNNVSNNITAPLSVDLLKGVATGGSRLSDVTTLAVGYIFIFSLVFFYLGTIALIRYTRGEPLTMGRLYGIASVAEAIPSLLRQFMAAMRHLMTMVKVAFLLVIELGVFPLMCGWWLDICTVRMFGKSMAQRVQFFSISPLASSLVHWAVGIVYMLQISIFVNLLRGVLRSGVLYFLRDPADPNYNPFRDLIDDPMHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMVPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLHCWFTVVGWALGLTDYLLPRTEENVGQENGNGEPGLQEELQVVHLGGQDQALVAHNAANDPNQVPASGNLSNEEYDNEEQTDSERYSFALRIVLLLVVAWMTLLVFNSALIVVPTSLGRALFNAIPLLPITHGIKCNDMYAFVIGSYVIWTAIAGARYSIEYVRARRVTVLLGQIWKWFAIVVKSSALLSIWIFLIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMIPLVDDSWRVKFERVREDGFSRLQGLWVLREIVVPIIMKLLTALCVPYVLARGVFPVFGYPLIVNSAVYRFAWIGCLCVSMLYFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEDSEEKQTDVGTSSETQNAHLLGTGHAAVAGEGLRLRRVVGN 1385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7408837 7418848 + CaPI482276_02g006410.1 Cam02g0641 120383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0641 1385 ProSiteProfiles Zinc finger RING-CH-type profile. 336 397 IPR011016 GO:0008270(InterPro)
Cam02g0641 1385 MobiDBLite consensus disorder prediction 512 542 - -
Cam02g0641 1385 PANTHER SSM4 PROTEIN 311 1352 - GO:0030176(PANTHER)|GO:0030433(PANTHER)
Cam02g0641 1385 Coils Coil 561 581 - -
Cam02g0641 1385 FunFam Probable E3 ubiquitin ligase SUD1 330 402 - -
Cam02g0641 1385 MobiDBLite consensus disorder prediction 1040 1059 - -
Cam02g0641 1385 MobiDBLite consensus disorder prediction 62 83 - -
Cam02g0641 1385 MobiDBLite consensus disorder prediction 299 337 - -
Cam02g0641 1385 ProSiteProfiles Zinc finger RING-type profile. 344 391 IPR001841 -
Cam02g0641 1385 SMART ringv_2 343 391 IPR011016 GO:0008270(InterPro)
Cam02g0641 1385 CDD RING_CH-C4HC3_MARCH6 343 392 - -
Cam02g0641 1385 Pfam RING-variant domain 344 390 IPR011016 GO:0008270(InterPro)
Cam02g0641 1385 MobiDBLite consensus disorder prediction 304 328 - -
Cam02g0641 1385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 331 402 IPR013083 -
Cam02g0641 1385 SUPERFAMILY RING/U-box 338 394 - -
Cam02g0641 1385 MobiDBLite consensus disorder prediction 159 180 - -
Cam02g0641 1385 MobiDBLite consensus disorder prediction 1040 1055 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0641 K10661 - - csv:101222781 2097.4
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g385 . Blo15g00755 Bda06g01078 . Bpe07g00369 . . Bma12g00433 Cmo19g00615 Cmo11g01375 . . . . . Cpe04g00289 Cpe15g00481 Bhi05g01074 . . . . . . Cla02g00612 Cam02g0641 Cec02g0640 Cco02g0661 Clacu02g0645 Cmu02g0640 Cre02g0964 . . Cone3ag0981 Cone10ag1001 . Csa07g00748 . Cme01g00060 . . . . . . . . . . . Cma11g01740 Cma19g00597 . . . . . . . . . . . . . . . . . . . . Chy01g00063 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005956 2 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 2 1 1 39