Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0642 ATGGCTCAGGTTCCACCTCAACCTCAAGTTCCCAACTCCGGTGCCGATCCGGCCGCCAATGGAGCGGCAAATCAGCATGTCACGACCTCCTTGTATGTTGGAGATCTTGACGTCAACGTCACCGATTCTCAGCTCTATGATCTTTTTAATCAGGTGGGGCAGGTGGTTTCTGTTAGGGTTTGCAGGGATTTGACCACCCGTCGATCGCTTGGTTATGGCTATGTCAATTACAGCAACCCAGTTGATGCGTCAAGGGCATTAGATATGCTAAACTTCACCCCTTTGAATGGGACTCCCATTAGAGTCATGTATTCACATCGTGACCCTAGTGTGCGGAAAAGTGGGTCTGGAAATATTTTTATCAAGAACTTGGACAAGGCAATTGATCACAAAGCTCTGCATGATACCTTTTCTGCATTTGGAAGCATTCTATCTTGCAAGGTTGCTACAGATTCATCTGGCCAGTCCAAAGGCTTTGGTTTTGTGCAATTTGACACTGAGGAAGCTGCCTTAAAAGCTATAGAAAAGTTGAATGGTATGCTGCTAAATGACAAGCAGGTGTTTGTGGGACCTTTCCTTCGCAAGCAAGAAAGAGAAAGTGTCAGTGAGAAAACGAAATTTAATAATGTTTTTGTTAAGAATCTAGCAGAAACTACATCTGAAGAAGATTTGAAGAATATGTTTGGGGAGTTTGGACCAATCACCAGTGTTGTGGTGATGAGGGATGGGGAAGGAAAATCAAAATGCTTTGGCTTTGTTAACTTTGAGAATGCGGATGATGCTGCTAGATCTGTTGAAGCCCTCAATGGAAAGAAGGTTGATGGGAAAGAGTGGTACGTTGGAAAAGCCCAGAAGAAATCTGAAAGGGAAGTTGAACTGAAAAATCGATTTGAGCAGAGTGTAAAAGAAGCTGCTGACAAGTATCAAGGTGCAAACTTGTATGTTAAGAATTTAGATGATAGCATTGACGATGAAAAACTGAAGGAGTTATTCACTGGGTTTGGAACCATTACCTCATGCAAGGTTATGCGTGACCCCAATGGAATCAGTAGAGGATCTGGCTTTGTTGCATTCTCAACTCCAGAAGAGGCTGGCAGAGCTCTTGCAGAGATGAATGGAAGAATGATTGTGAGCAAGCCTCTTTATGTTGCACTTGCACAGAGGAAGGAAGATAGAAGAGCTAGGTTGCAGGCACAATTTTCCCAAATGCAGCCAATGGCAATGGCATCTTCAGTTGCTCCTCGTGGCATGCCAATGTATCCTCCAGGTGGTCCAGGTATTGGACAACAGATATTCTATGGCCAAGCTCCACCTACTATTATTTCCTCCCAGCCCGGCTTTGGTTATCAACAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCCATGCCAAATTTCTTTGTACCAATGGTTCAGCAGGGCCAGCAAGGGCAAAGATCCGGTGGCAGGCGTGCTGGTGCCATTCAGCAAACCCAGCAGCCTGTTCCTTTGATGCAGCAGCAGATGCTACCAAGAGGACGTGTCTACCGTTATCCTCCTGGACGTGGACTGCCTGATCTTCCCATGCCTGGTGTTGCTGGAGGCATGTTCTCTGTTCCATATGAGATGGGTGGAATGCCACCGCGGGATGCAGTCCACCCTCAACCAGTTCCTGTGGGTGCTTTGGCTTCTGCTCTTGCAAATGCAACTCCAGACCAGCAGAGAACGATGCTGGGGGAAAATCTTTATCCACTTGTGGAACAGCTAGAGCCTGATAATGCGGCCAAGGTAACAGGAATGCTATTGGAAATGGACCAAACTGAGGTTCTTCACTTGCTGGAGTCACCTGAAGCTCTGAAAGCCAAGGTGGCGGAGGCGATGGAGGTTTTAAGAAGTGTCGCTCAGCAGACTGGCAATGCAGCTGATCAATTGGCTTCACTATCTCTGACTGACAACCTTGATTCCTAA 1950 46.72 MAQVPPQPQVPNSGADPAANGAANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPVDASRALDMLNFTPLNGTPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAADKYQGANLYVKNLDDSIDDEKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSTPEEAGRALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQTGNAADQLASLSLTDNLDS 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7421315 7424709 - CaPI482276_02g006420.1 Cam02g0642 120384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0642 649 PANTHER RNA BINDING PROTEIN 23 209 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Cam02g0642 649 FunFam Polyadenylate-binding protein 294 399 - -
Cam02g0642 649 FunFam Polyadenylate-binding protein 16 114 - -
Cam02g0642 649 SUPERFAMILY RNA-binding domain, RBD 208 391 IPR035979 GO:0003676(InterPro)
Cam02g0642 649 Gene3D - 3 110 IPR012677 -
Cam02g0642 649 Gene3D - 111 197 IPR012677 -
Cam02g0642 649 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676(InterPro)
Cam02g0642 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723(InterPro)
Cam02g0642 649 CDD RRM3_I_PABPs 207 286 - -
Cam02g0642 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723(InterPro)
Cam02g0642 649 SUPERFAMILY PABC (PABP) domain 493 638 IPR036053 GO:0003723(InterPro)
Cam02g0642 649 Gene3D - 198 295 IPR012677 -
Cam02g0642 649 Gene3D - 296 401 IPR012677 -
Cam02g0642 649 FunFam Polyadenylate-binding protein 199 293 - -
Cam02g0642 649 Pfam RNA recognition motif 313 381 IPR000504 GO:0003723(InterPro)
Cam02g0642 649 Pfam RNA recognition motif 210 278 IPR000504 GO:0003723(InterPro)
Cam02g0642 649 Pfam RNA recognition motif 31 101 IPR000504 GO:0003723(InterPro)
Cam02g0642 649 Pfam RNA recognition motif 119 186 IPR000504 GO:0003723(InterPro)
Cam02g0642 649 CDD RRM1_I_PABPs 30 109 IPR034364 -
Cam02g0642 649 Gene3D - 547 631 - -
Cam02g0642 649 MobiDBLite consensus disorder prediction 1 21 - -
Cam02g0642 649 CDD RRM2_I_PABPs 115 191 IPR045305 -
Cam02g0642 649 CDD RRM4_I_PABPs 310 388 - -
Cam02g0642 649 SMART rrm2_1 118 190 IPR003954 GO:0003676(InterPro)
Cam02g0642 649 SMART rrm2_1 209 281 IPR003954 GO:0003676(InterPro)
Cam02g0642 649 SMART rrm2_1 312 384 IPR003954 GO:0003676(InterPro)
Cam02g0642 649 SMART rrm2_1 30 103 IPR003954 GO:0003676(InterPro)
Cam02g0642 649 FunFam Polyadenylate-binding protein 548 630 - -
Cam02g0642 649 Pfam Poly-adenylate binding protein, unique domain 559 624 IPR002004 GO:0003723(InterPro)
Cam02g0642 649 SMART rrm1_1 312 384 IPR000504 GO:0003723(InterPro)
Cam02g0642 649 SMART rrm1_1 30 103 IPR000504 GO:0003723(InterPro)
Cam02g0642 649 SMART rrm1_1 209 281 IPR000504 GO:0003723(InterPro)
Cam02g0642 649 SMART rrm1_1 118 190 IPR000504 GO:0003723(InterPro)
Cam02g0642 649 FunFam Polyadenylate-binding protein 115 198 - -
Cam02g0642 649 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723(InterPro)
Cam02g0642 649 SMART poly_2 564 627 IPR002004 GO:0003723(InterPro)
Cam02g0642 649 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 30 625 IPR006515 GO:0003723(InterPro)
Cam02g0642 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723(InterPro)
Cam02g0642 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0642 Cam-Chr2:7421315 Cam08g1159 Cam-Chr8:17959582 4.30E-186 dispersed
Cam05g0350 Cam-Chr5:3264295 Cam02g0642 Cam-Chr2:7421315 3.00E-16 transposed
Cam05g0845 Cam-Chr5:7524516 Cam02g0642 Cam-Chr2:7421315 6.80E-30 transposed
Cam07g1752 Cam-Chr7:32207530 Cam02g0642 Cam-Chr2:7421315 7.20E-08 transposed
Cam08g1223 Cam-Chr8:18609226 Cam02g0642 Cam-Chr2:7421315 2.50E-06 transposed
Cam10g1747 Cam-Chr10:31513567 Cam02g0642 Cam-Chr2:7421315 3.10E-08 transposed
Cam02g0642 Cam-Chr2:7421315 Cam05g1180 Cam-Chr5:11063566 0.00E+00 wgd
Cam02g0642 Cam-Chr2:7421315 Cam09g1803 Cam-Chr9:32361860 1.30E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0642 K13126 - csv:101223017 1196.42