Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0684 ATGAATTCTGATTCGTCTCGCTCGGCTAATTCCTCCGCCCACAGATCCAAGCGAATTCTCGTCAATTCATCTCCGTCAAACGCTTCCAGTAGCGGTGGCAACAAAAAGAAACGGATCAATCAGAAAACCCTAGGCGTCGCATGGGGAGCCAATTCCATTTCATCCTCTCGCTCCTCTCGCAAATCCCCATTTTCAGATTTCGGAAGTTATATGGTAGAAAAGAACAGAAAACTTCACAATCAGTTTAACGTTGATGCTTCAAGTGCTTCACATAGTGGTACGAACTCAGGAAATCAAATATTTCAGGGCGTTTCTATCTTTGTTGACGGTTTCACGATTCCTTCCAGTCAGGAATTGCGGGGTTATATGTTGAAGTATGGTGGAAGATTTGAGAACTATTTTTCAAGACATAGTGTTTCTCATATAATTTGCAGTAATTTACCGGACAGTAAAATAAAAAATCTCAGGTCCTTCAGCGGTGGACTCCCAGTTGTAAAACCCACATGGATCTTGGATTCTGTTGCTTCTAATAAGCTATTAAGTTGGGTTCCTTACCAACTTGATCAGCTTGTAAGTAATCAACCAAGACTATCAGAATTCTTTTCTATGAAAAAAGGTCCGACGCTGGAGAAACCCAAAATTTGCATGACTACTGAAAAGAAATATGGAGCAGGGGATATACCGTCCCTGGTGGCTATGAAGTCAAGAGATACCACTTCGTCTGAAGTGAATGAAACGATAGAATATAGAGCAGAGATGCATTCCTCTGAAATGAATCTTCAAGATAATGCAGATGCCAAACTGAATGAGAAGTCAAGTGATGACTTAGAGGCTGCCAAACTAAAGGATACAAATATATCTGATGTAGATGTATCTATTGAATATAAACCACAAGTTTGTGAAAGTTTTGAGATGCTTCCTCGAAAGGATGCTGATGTAGAAGTACAGAAAGGGCCAAGCAATGAAAAATGTAATTATGCAGATGAACCAGGAATTGATGATGTGGGTCAGAGCAGTGAAGAAAATATATCTAGTTTGCATGGTTTGTCTGCCTCAACTCACAGCGGCAGCAACAATAATTATCATAGCGATGGATCATCAAGTTCTATGGTGGCTGGGTCTTCTAAGCTGCGGCATTCAACTCTTGGGAATCCAGATTTTGTGGAAAATTATTTCAAGAAGTCAAGGCTGCATTTCATTGGAACTTGGAGAAGTCGTTATTATAAGCGTTTTCCACGATCAGCTAATGGGTCCAATTCTGTGACTTCTCATATCAATGGTTCTTCCCACTATCAGTCTGCCACTATTATCCATGTTGACATGGACTGCTTTTTTGTCTCAGTGGTTATTCGAAATATTCCTGAATTTAAGGATAGGCCTATAGCTGTATGCCACTCAGATAATCCTAAAGGAACTGCAGAAATTTCATCTGCAAACTACCCAGCTCGAGGTTATGGAGTCAGAGCGGGAATGTTTGTTAGGGATGCAAAAGCTCTCTGTCCCCATCTTGTTATTTTTCCATATGACTTCAAGTCCTATGAGGAGGTAGCCGATCAGTTCTACGACATATTGCATAAGCATTGTGAGAAAGTGCAGGCTGTAAGCTGTGATGAAGCATTTTTGGATATCTCGGGCGCAAACAAGGTAGATCCTGAGGTCTTGGCTTCAAAAATAAGAAAAGAAATTTTTGATACAACAGGATGTACTGCAAGTGCTGGAATAGCTACTAATATGCTAATGGCTCGCCTTGCCACTAGAACTGCAAAACCTGATGGTCAGTGTTACATTCCTTCAGAGAAGGTTGGTGATTATTTAGATCCGCTTCCCATTAAGGATCTTCCTGGAATAGGGCATGCCTTAGAGGAAAAGTTGAAGAAAAGAAGCATTTTGACTTGTGGTCAGCTGCGTATGATATCCAAGGACTCTCTTCAGAAAGACTTTGGATTAAAAACAGGGGAGATGTTATGGAATTATAGTCGGGGGGTGGACAATCGTGCAGTTGGGTTGATCCAGGAAAGCAAATCCATAGGAGCTGAAGTGAACTGGGGTGTTAGGTTCAAGGACTTCAAAGATTGTCAATGCTTTCTCTTGAACCTTTGTAAGGAGGTTTCATTACGGTTGCATGGATGTGGAGTGCAGGGACGCACCTTTACCCTCAAGATAAAAAAACGAAGAAAAGATGCTGATGAACCCACAAAGTATATGGGCTGTGGAGATTGTGAAAACCTGAGCCATTCATTGACGATTCCTGTTGCCACTGACAACCTGGAAATTCTTCAGAGGATTGTAAAGCAGCTTTTCGGGTTTTTTGTCATTGATGTCAAAGAAATTCGTGGTATTGGTTTACAAGTTTCGAAACTTCAAAATGTGGGCATCTCCAAGGAAGGGATGAAAAGAAATTCTTTGGACTCATGGCTTAGTTCATCTGCAACTACAAATCTAGAAAATAGCACTGGTCCTTTGGTAAAGGAAAGGGCTAATATAGATAATGAGAAACAGAGTGTCTCTGGAACTTTAGGAATAAGCCATCTGATTCAGATGGAGAATAACCAGCACCATTGTGAAGCTTTGAATCCGGTTTCAGCTCCACCTCTGTGCAATCTGGATGTTGGAGTTATAAAGAGCCTACCTCCTGAACTTTTTTCAGAGTTAAATGAAATCTACGGTGGGAAACTAATTGATCTCCTAGCTAAAAGCAGAGACAAGAATGAAGCTTTCTCCTCTTCTATAAGGGATCCGTCTCAAGGATTAGGAGGTGATGGACTTACTTTATCGGATGTCCAAGGAAACAAAATACAGTTGGAAAATAAGATTTCTGGGGAAGGATTGTGCAATTTGGTGACTCCTGTTCCCACATCTGGATCTCATACAATTGATTTACTACCTTCATCTCTAAGTCAAGTAGATCCATCAGTATTACAAGAGTTACCTGAACCACTGAGGGCTGACATACTTAAGCAACTCCCAGCACACAGGGAAAAAGAACTTGCTCTGGAATATTCAGTCAAAAATCATCAGGAATCATGCGGTGCTATTGGCAGTACATCTGGCTCAATTGATTCTTTGATGGAAAATGATCTTTGGTCTGGGAACCCACCTCTATGGGTTGATAAATTTAAAGTTAGCAATTGCTTGATATTAAATTTTCTTGCAGAGGTGTATACAGAAAAAGGGTCACCGGGAAATCTATATGGGATTTTGCTGAGGACTTTGTCTCAATCTTGGCATCCTTCAGCCGCAGATTCTTATGGTTGGGATGGTGCTATCAATGGTTTATGTGAACTTCTTAAGCAGTACTTTAAGTTAAAGATAGAGTTGGATATCGAGGAGACCTATGTTTGTTTTCGTCTGCTTAAGAGGTTAGCAATGAAGTCACAGCTGTTTTTGGAAGTCTTCAACATTATTGATCCTTACCTTCAGGGGGCAGTCAATGAAATCTACGGCGGAAGTTTGAAGGTGTAG 3462 40.81 MNSDSSRSANSSAHRSKRILVNSSPSNASSSGGNKKKRINQKTLGVAWGANSISSSRSSRKSPFSDFGSYMVEKNRKLHNQFNVDASSASHSGTNSGNQIFQGVSIFVDGFTIPSSQELRGYMLKYGGRFENYFSRHSVSHIICSNLPDSKIKNLRSFSGGLPVVKPTWILDSVASNKLLSWVPYQLDQLVSNQPRLSEFFSMKKGPTLEKPKICMTTEKKYGAGDIPSLVAMKSRDTTSSEVNETIEYRAEMHSSEMNLQDNADAKLNEKSSDDLEAAKLKDTNISDVDVSIEYKPQVCESFEMLPRKDADVEVQKGPSNEKCNYADEPGIDDVGQSSEENISSLHGLSASTHSGSNNNYHSDGSSSSMVAGSSKLRHSTLGNPDFVENYFKKSRLHFIGTWRSRYYKRFPRSANGSNSVTSHINGSSHYQSATIIHVDMDCFFVSVVIRNIPEFKDRPIAVCHSDNPKGTAEISSANYPARGYGVRAGMFVRDAKALCPHLVIFPYDFKSYEEVADQFYDILHKHCEKVQAVSCDEAFLDISGANKVDPEVLASKIRKEIFDTTGCTASAGIATNMLMARLATRTAKPDGQCYIPSEKVGDYLDPLPIKDLPGIGHALEEKLKKRSILTCGQLRMISKDSLQKDFGLKTGEMLWNYSRGVDNRAVGLIQESKSIGAEVNWGVRFKDFKDCQCFLLNLCKEVSLRLHGCGVQGRTFTLKIKKRRKDADEPTKYMGCGDCENLSHSLTIPVATDNLEILQRIVKQLFGFFVIDVKEIRGIGLQVSKLQNVGISKEGMKRNSLDSWLSSSATTNLENSTGPLVKERANIDNEKQSVSGTLGISHLIQMENNQHHCEALNPVSAPPLCNLDVGVIKSLPPELFSELNEIYGGKLIDLLAKSRDKNEAFSSSIRDPSQGLGGDGLTLSDVQGNKIQLENKISGEGLCNLVTPVPTSGSHTIDLLPSSLSQVDPSVLQELPEPLRADILKQLPAHREKELALEYSVKNHQESCGAIGSTSGSIDSLMENDLWSGNPPLWVDKFKVSNCLILNFLAEVYTEKGSPGNLYGILLRTLSQSWHPSAADSYGWDGAINGLCELLKQYFKLKIELDIEETYVCFRLLKRLAMKSQLFLEVFNIIDPYLQGAVNEIYGGSLKV 1153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8088383 8099948 + CaPI482276_02g006840.1 Cam02g0684 120426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0684 1153 FunFam DNA repair protein REV1 93 188 - -
Cam02g0684 1153 Pfam impB/mucB/samB family C-terminal domain 673 789 IPR017961 GO:0003684(InterPro)|GO:0006281(InterPro)
Cam02g0684 1153 ProSiteProfiles BRCT domain profile. 96 187 IPR001357 -
Cam02g0684 1153 SMART BRCT_7 98 177 IPR001357 -
Cam02g0684 1153 MobiDBLite consensus disorder prediction 1 38 - -
Cam02g0684 1153 Gene3D BRCT domain 90 187 IPR036420 -
Cam02g0684 1153 Gene3D - 608 662 - -
Cam02g0684 1153 Pfam DNA polymerase-iota, thumb domain 611 663 IPR053848 GO:0003887(InterPro)
Cam02g0684 1153 MobiDBLite consensus disorder prediction 337 372 - -
Cam02g0684 1153 CDD BRCT_Rev1 100 187 - -
Cam02g0684 1153 FunFam DNA repair protein REV1 673 794 - -
Cam02g0684 1153 Pfam BRCA1 C Terminus (BRCT) domain 99 174 IPR001357 -
Cam02g0684 1153 Gene3D - 672 793 IPR036775 GO:0003684(InterPro)|GO:0006281(InterPro)
Cam02g0684 1153 Gene3D - 436 596 IPR043128 -
Cam02g0684 1153 ProSiteProfiles UmuC domain profile. 436 617 IPR001126 GO:0006281(InterPro)
Cam02g0684 1153 SUPERFAMILY DNA/RNA polymerases 432 667 IPR043502 -
Cam02g0684 1153 Gene3D - 453 507 - -
Cam02g0684 1153 Pfam impB/mucB/samB family 439 586 IPR001126 GO:0006281(InterPro)
Cam02g0684 1153 Gene3D - 385 420 - -
Cam02g0684 1153 MobiDBLite consensus disorder prediction 313 372 - -
Cam02g0684 1153 MobiDBLite consensus disorder prediction 1 41 - -
Cam02g0684 1153 CDD PolY_Rev1 387 787 - -
Cam02g0684 1153 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 672 785 IPR036775 GO:0003684(InterPro)|GO:0006281(InterPro)
Cam02g0684 1153 FunFam DNA repair protein REV1 453 507 - -
Cam02g0684 1153 PANTHER DNA REPAIR PROTEIN REV1 1 1152 - GO:0003887(PANTHER)|GO:0005634(PANTHER)|GO:0017125(PANTHER)|GO:0042276(PANTHER)|GO:0070987(PANTHER)
Cam02g0684 1153 SUPERFAMILY BRCT domain 69 189 IPR036420 -
Cam02g0684 1153 PIRSF REV1 50 1010 IPR012112 GO:0003684(InterPro)|GO:0006281(InterPro)|GO:0016779(InterPro)|GO:0042276(InterPro)
Cam02g0684 1153 FunFam DNA repair protein REV1 494 596 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0684 K03515 - - csv:101214381 1973.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0684 Cam-Chr2:8088383 Cam02g0717 Cam-Chr2:8528034 2.00E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g647 . . . . . . . . Cmo19g00586 . . . . . . . Cpe15g00458 . . . . . . . Cla02g00651 Cam02g0684 Cec02g0698 Cco02g0718 Clacu02g0692 Cmu02g0687 Cre02g1006 . Cone8ag1100 . . Lsi03g00548 Csa07g00711 . . . . . . . . Bma03g01373 . . . . . Cma19g00572 . Car19g00431 . . . . . . . . . . . . . . . . . . Chy01g00104 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010766 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 3 1 1 32