Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0695 ATGGCAACCTTCACCTCTTCTCTCTCGCTCCCTCTCCAATTCCATCGCTTATCTCGCTCTCGCCGCCAATTTTCTTCACCTCCTCTTCCTCCTTCCGCCAATTTCACCTTCCGATTCTCAGCCCTAACTATCTCCTCCTCCTCCTTGCACTCCGCCTCCGACAATTTTGATCATGCCAACCACTCGCACTCGCGTTTTTCATCCAAGAAATCAGTTCTTTCAGCTTTGATACAAGAGATAGAGCCGTTAGATGTAAGCGTAATCCAGAAAGATGTTCCACCTACCACTGTGGATGCTATGAAAAGGACTATCTCAGGCATGCTGGGGTTACTTCCATCTGACCAGTTTCAAGTTTTAGTTGAGGCTTTATGGGAACCAGTATCTAAGTTATTAGTTTCTTCAATAATGACCGGGTACACATTGCGTAATGCTGAATATAGACTCTGCCTTGAAAGAAATCTCGACTTTGATGATGGAAATAAGGACAAACAATCAAATGATAATTGTAGAGTTAACCTACATGAAATGTTGCTTGACAGTGCAAATTTAGCAAATGTTTCAGATGAAAACGAGTCTTCTTCCAATTGTGAGGAATCGTTGGACAAATCATCAGAAAGCATTAATATTCAAGGCATTGGCGAAACTTCTCCTGAAGTTCAACAACATATTCTTCATTTGCAGTTCCAATTATCTTCAATTAAAAAGGAACTCCATGAGGTAAAGAGGAAAAGTGAAGCTCTTCAGATGCAACAGTTTGTTGGTGAGGAGAAAAATGATCTTTTGGACTATCTGAGATCATTACAGCCAGAAAAGGTGGCTGAGTTGTCCGAACCTACATCCCCTGATTTAAAAGAAGCCATACATTCTGTTGTCCATGGACTTCTCGCGACCCTTTCCCCAAAGGTTCATTCCAAAGTTCCTTCTCAATCAGAAAATATTGGAACAAGCACAACAAATATTGGTAATGAAGACTGTGCAGAACTTGTTGAGAATACTTCTCTCCAATTCCAGCCTCTCTTAACATTAACTCGAGACTATCTGGCTCGTCTACTTTTCTGGTGCATGCTGTTGGGGCATTACCTGAGAGGCCTGGAATACAGAATGGAGCTGATGAATCTTCTTTCCCTTTCAAGCAATGTTGAAAATGCAGCAGTATATATACAGCTTTCAAATAAAGTGTCTTTTTGGGTCCCAATGGCATCATCTACAACTTCTATGGCTTCCTGGCCTCCTCCATGTACAACACATCGAGTCGTGGTGAAGTTAATCTCTTGTTTGAGATACCCTTGTCAACAATGGACCATTACATTGGCGATGAGTCCCCACATCCTAACTTTGGCTAAAGACTTCCAAGGTGGCCATCAAGTGCTACGGAGCTGCTTCTACAATCTTTCTCCACCACCCAATGAGTTGATCCTGCTTAGAATAGCACAAAATTGCTATGAGCTGGCAAGAAATCAAGCTGGTTGTTGTATACTCCAAGAGTGCATTGAATATTCCAATGATAAATTAAGACAACTTCGAGAAGTTCTCATATCCCCATTGATACAAGATGCAGATAATCTTTCAATACATCCTTACGGGAATTATGTAATTCAATATATGATTCAATTGGATGGAGCAAACATAGGATGGAGGATAATCAATGAACTTAAAAACAAATTTGTCGTACTTTCTATGGACAAGTTTGGAAGCAATGTGGTGGAAAAATGTCTATCTTGTTGTGAAGGTGGCTTTGACTATATTATCTATGAAATTTTAGAGAATAACAATGAAAATCAACTCCTTCAAATTTGTACGGATCGATATGGCAATTATGTTATCCAGACAGCCATGTCGGTGGCTAAGGGAGAAGCTTATAAGTTACTTGGAAGAGGCATTAAAAGCCATTGGTTTTATCTTCAATCTCATCCGTATGGAAAAAATGTGATTCCATCAACCAAATTACGTGGTAAAAAGAAGTCAAAATTACAAGAATTTTAA 1983 39.84 MATFTSSLSLPLQFHRLSRSRRQFSSPPLPPSANFTFRFSALTISSSSLHSASDNFDHANHSHSRFSSKKSVLSALIQEIEPLDVSVIQKDVPPTTVDAMKRTISGMLGLLPSDQFQVLVEALWEPVSKLLVSSIMTGYTLRNAEYRLCLERNLDFDDGNKDKQSNDNCRVNLHEMLLDSANLANVSDENESSSNCEESLDKSSESINIQGIGETSPEVQQHILHLQFQLSSIKKELHEVKRKSEALQMQQFVGEEKNDLLDYLRSLQPEKVAELSEPTSPDLKEAIHSVVHGLLATLSPKVHSKVPSQSENIGTSTTNIGNEDCAELVENTSLQFQPLLTLTRDYLARLLFWCMLLGHYLRGLEYRMELMNLLSLSSNVENAAVYIQLSNKVSFWVPMASSTTSMASWPPPCTTHRVVVKLISCLRYPCQQWTITLAMSPHILTLAKDFQGGHQVLRSCFYNLSPPPNELILLRIAQNCYELARNQAGCCILQECIEYSNDKLRQLREVLISPLIQDADNLSIHPYGNYVIQYMIQLDGANIGWRIINELKNKFVVLSMDKFGSNVVEKCLSCCEGGFDYIIYEILENNNENQLLQICTDRYGNYVIQTAMSVAKGEAYKLLGRGIKSHWFYLQSHPYGKNVIPSTKLRGKKKSKLQEF 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8210287 8220505 + CaPI482276_02g006950.1 Cam02g0695 120437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0695 660 Pfam Pumilio-family RNA binding repeat 595 618 IPR001313 GO:0003723(InterPro)
Cam02g0695 660 Pfam Pumilio-family RNA binding repeat 479 506 IPR001313 GO:0003723(InterPro)
Cam02g0695 660 Pfam Pumilio-family RNA binding repeat 555 577 IPR001313 GO:0003723(InterPro)
Cam02g0695 660 Pfam Pumilio-family RNA binding repeat 522 537 IPR001313 GO:0003723(InterPro)
Cam02g0695 660 ProSiteProfiles Pumilio RNA-binding repeat profile. 514 549 IPR001313 GO:0003723(InterPro)
Cam02g0695 660 Pfam Protein of unknown function (DUF760) 259 374 IPR008479 -
Cam02g0695 660 Pfam Protein of unknown function (DUF760) 73 154 IPR008479 -
Cam02g0695 660 ProSiteProfiles Pumilio RNA-binding repeat profile. 550 572 IPR001313 GO:0003723(InterPro)
Cam02g0695 660 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 268 651 IPR033133 GO:0003723(InterPro)
Cam02g0695 660 PANTHER OS02G0833400 PROTEIN 45 381 - -
Cam02g0695 660 SMART pum_5 475 510 IPR001313 GO:0003723(InterPro)
Cam02g0695 660 SMART pum_5 590 624 IPR001313 GO:0003723(InterPro)
Cam02g0695 660 SMART pum_5 550 585 IPR001313 GO:0003723(InterPro)
Cam02g0695 660 SMART pum_5 514 549 IPR001313 GO:0003723(InterPro)
Cam02g0695 660 ProSiteProfiles Pumilio RNA-binding repeat profile. 585 625 IPR001313 GO:0003723(InterPro)
Cam02g0695 660 Coils Coil 230 250 - -
Cam02g0695 660 SUPERFAMILY ARM repeat 417 644 IPR016024 -
Cam02g0695 660 ProSiteProfiles Pumilio RNA-binding repeat profile. 475 513 IPR001313 GO:0003723(InterPro)
Cam02g0695 660 Gene3D - 413 647 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0695 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0695 Cam-Chr2:8210287 Cam10g1213 Cam-Chr10:25495479 1.30E-39 dispersed
Cam02g0695 Cam-Chr2:8210287 Cam02g0699 Cam-Chr2:8292260 3.40E-122 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g661 . . . . . Bpe12g00302 . . . Cmo11g01400 . . . . Sed06g0592 Cpe04g00310 . Bhi05g01055 Tan02g0996 Cmetu04g1635 Lac12g0194 . . . Cla02g00660 Cam02g0695 Cec02g0708 Cco02g0727 Clacu02g0701 Cmu02g0699 Cre02g1014 . . . . Lsi03g00555 Csa07g00704 . Cme01g00102 . . Bda15g00839 . . . . Bma08g00458 . . . Cma11g01715 . Car11g01126 . . . . . . . . . . . . . . . . . . . Chy01g00110 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009529 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 33