Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0711 ATGATAATTACAGGCCGGGCAGTCGGGACATGTGAGAGAAAGGGCGACAGAAACATGTGGTGGCATGATCTGCACGTCAAAGACTCGAGCGATGGTTCAGATCTGACGTGCGGCACGAACGGAGCGGTGAACGGTAGTGATTTCGACCGGAGAAGAACTCGACCTCTAAAATCTATCGGGAAAATCCGGCCAAGCTTTTCTCCTTTAACTTTCTCCATGACGACCTCTTCACTCTCCCATCTCTCTGCTCCGCCGTCGTTAGCCATCGACAGCTCAAAGTCTTCCTTCCTCTTCGGTACACAGCTGCCCTTCCCATCCTCTCGCTCAAGAACTTCATGTCGCAGATATGTCCTATCTCCCTCCGCCAAACAATCTATGGACCACATTCCTAAGCAGTTTAGAGGAGAAAATCTCAAAGATGGATTGATGGAGAACTACAAGAATACTCCTAAGTATCTTTATGGCCTTACACCTTCACAAATGGACATGTTCATGACAGAAGATAATCCCGTCCGGCGGCAGTCAGAATTAGTTACTGAGGAAAACATATCATCTTCCCACAACTACTTGAATCATGGAGGAATGTGGAGTCTATCTGGCATGGATGGGAAGGGTCCAGCAAAATATAGTATGAGTGTTAGCATGTATCGTGGGGGAGGAAGAGGAGCCGGGCGACCTCGAACAGCTCCTCCTGATTTGCCCTCTTTGCTCTTAGATGCTCGTATATGCTATTTGGGCATGCCCATTGTACCATCAGTGACTGAGCTTCTTGTTGCTCAGTTTATGTGGCTAGATTATGATAACCCGTCAAAGCCTATATATCTCTACATAAACTCTTCTGGGACACAGAATGAGAAGATGGAGACGGTTGGGTCTGAAACTGAAGCATACGCTATAGCAGATATGATGGCTTACTGCAAATCGGATGTCTATACCGTTAACTGTGGAATGGCATTCGGTCAAGCGGCAATGCTTTTGTCACTTGGAACCAAGGGTTACCGTGGTGTCCAACCTAACTCTTCCACTAAACTATATCTGCCTAAAGTTAATAGATCAAGTGGTGCGGCCATAGATATGTGGATTAAGGCCAAAGAACTCGATGCCAACACCGAGTACTATCTCGAGCTATTAGCTAAAGGAACTGGCAAACCCAAGGAAGAGATTGCCAAAGATGTCCAACGACCCAGATACTTCCAAGCACAAGAAGCTATTGACTACGGCATTGCAGACAAAATAATCGACTCTCAAGATACCGCATTTGAAAAAAGGAATTACGACGAGATGCTTGCGCAGTCGAGAGCTATGAGGAGAGGACCAGGAGGCAATCCACAAGCGGCACCGTCTGGGCTCAGAGATTTGACAGCTTTCAAGATCTACATCCATGTCGTTGAATTTTTAGTTTCCCCATTGTATCGATACAACTCCAACTTCATTTCATCGGACCGTCTCCTCGCCGGTTACTGCAATGGTGGTCTGCAAATGCCGCAAGGTTTGGTTGATATTTGGGATCGGATCCACGTTTGGGAGTTCGGAATTAGAAGCGATCTGAATGCTTGGTTAATTGCTTGTAGGGAGAATTGCGGAATTATAAGCTCATTTTCTACGAGGGCCACGAAGTTGTATTGTTTTGTTCATAAGGTTCCCGTTTGTGGAGAATGCATTTGTTTCCCAGAACACCAAATATGCGTGGTTCGTACCTATTCAGAGTGGGTATTGAATGGAGATTATGATTGGCCTCCAAATTGCTGCCTGTGTCATGCTACACTCGAGGAAGGAGTTGGTCCTCAAACTACTCGATTGGGATGTTTGCATGTCATACATACGGATTGCTTGGTCTCACATATCAAGAGCTTTCCTCCATCCACTGCCCCTGCTGGATATGACTGTCCTGCCTGTTCTGTTTCGATTTGGCCTCCGAAGAACTTTAAAGATTCAGGATCTCGTCTACATGCAAAGCTAAAGGAAGCCATCTTGCAGACTGGTCTGGAAAAGAATTTGTTTGGAAATCATCCAGTTGCATTATCACCTACAGAATCCCGTGGTCCTCCTCCTGCCTTTGCCTCAGATCCCTTGGTTTCCTCTTCAGGAGACACACATAACAATAAGAGTTCATTAAATTCAATAGCAAACACTGAGTCAAATCTGGGTGAAGGGTTCTCCGCCACAACTGGAAACGGGTCTTCCAAAAATAACATTGCAGATATTGTAGAGATTGAAATGCCTGGTTCAGAAGGAAATTTTGTGAAAAGCTCAAGTCCTTCAGGCCCTGTTGCTACCACAAGAAAAGGTGCACTCAATTATGACAGGCAAAATTCTGAAATTTCATATTATGCTGATGATGAAGACGGTAATCGTAAGAAGTATGTTCGAAGAGGTCCTTTTAAGCACAAGTTTCTTAGAGCACTACTTCCTTTCTGGTCAACTGCATTGCCAACGCTACCCGTGACTGCACCTCCTCGTAAAGATGCACCGAATGCCAATGATGTCAGTGAAGGTCGCGTTCGGCACCAAAGACCCTCCAGAATGGATCCGAGAAAAATTCTTCTTATCATAGCAATCATGGCATGTCTGGCAACAATGGGTATTTTGTACTACAGACTTGTACAAAGAGATATTGGAGAAGAATTTGTGGATGACGAGCAGCAATTGCAAGCAGCACAATGA 2664 45.31 MIITGRAVGTCERKGDRNMWWHDLHVKDSSDGSDLTCGTNGAVNGSDFDRRRTRPLKSIGKIRPSFSPLTFSMTTSSLSHLSAPPSLAIDSSKSSFLFGTQLPFPSSRSRTSCRRYVLSPSAKQSMDHIPKQFRGENLKDGLMENYKNTPKYLYGLTPSQMDMFMTEDNPVRRQSELVTEENISSSHNYLNHGGMWSLSGMDGKGPAKYSMSVSMYRGGGRGAGRPRTAPPDLPSLLLDARICYLGMPIVPSVTELLVAQFMWLDYDNPSKPIYLYINSSGTQNEKMETVGSETEAYAIADMMAYCKSDVYTVNCGMAFGQAAMLLSLGTKGYRGVQPNSSTKLYLPKVNRSSGAAIDMWIKAKELDANTEYYLELLAKGTGKPKEEIAKDVQRPRYFQAQEAIDYGIADKIIDSQDTAFEKRNYDEMLAQSRAMRRGPGGNPQAAPSGLRDLTAFKIYIHVVEFLVSPLYRYNSNFISSDRLLAGYCNGGLQMPQGLVDIWDRIHVWEFGIRSDLNAWLIACRENCGIISSFSTRATKLYCFVHKVPVCGECICFPEHQICVVRTYSEWVLNGDYDWPPNCCLCHATLEEGVGPQTTRLGCLHVIHTDCLVSHIKSFPPSTAPAGYDCPACSVSIWPPKNFKDSGSRLHAKLKEAILQTGLEKNLFGNHPVALSPTESRGPPPAFASDPLVSSSGDTHNNKSSLNSIANTESNLGEGFSATTGNGSSKNNIADIVEIEMPGSEGNFVKSSSPSGPVATTRKGALNYDRQNSEISYYADDEDGNRKKYVRRGPFKHKFLRALLPFWSTALPTLPVTAPPRKDAPNANDVSEGRVRHQRPSRMDPRKILLIIAIMACLATMGILYYRLVQRDIGEEFVDDEQQLQAAQ 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8424661 8439642 + CaPI482276_02g007110.1 Cam02g0711 120453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0711 887 ProSiteProfiles Zinc finger RING-type profile. 582 633 IPR001841 -
Cam02g0711 887 PANTHER ZINC FINGER PROTEIN-LIKE 1 535 879 IPR039043 GO:0005794(PANTHER)
Cam02g0711 887 MobiDBLite consensus disorder prediction 816 838 - -
Cam02g0711 887 SUPERFAMILY ClpP/crotonase 227 417 IPR029045 -
Cam02g0711 887 FunFam ATP-dependent Clp protease proteolytic subunit 207 417 - -
Cam02g0711 887 Gene3D - 221 420 - -
Cam02g0711 887 PRINTS Clp protease catalytic subunit P signature 312 329 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Cam02g0711 887 PRINTS Clp protease catalytic subunit P signature 272 292 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Cam02g0711 887 PRINTS Clp protease catalytic subunit P signature 232 247 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Cam02g0711 887 PRINTS Clp protease catalytic subunit P signature 391 410 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Cam02g0711 887 CDD Bbox2 539 560 - -
Cam02g0711 887 MobiDBLite consensus disorder prediction 691 709 - -
Cam02g0711 887 Pfam Clp protease 234 415 IPR023562 -
Cam02g0711 887 CDD S14_ClpP_2 232 412 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Cam02g0711 887 MobiDBLite consensus disorder prediction 669 709 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0711 K01358 - - csv:101215656 689.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0711 Cam-Chr2:8424661 Cam02g1601 Cam-Chr2:28895537 2.50E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g697 . . . . . . . . Cmo19g00569 Cmo11g01418 . . . . . Cpe04g00325 Cpe15g00443 Bhi05g01042 . . . . . . Cla02g00678 Cam02g0711 Cec02g0724 Cco02g0746 Clacu02g0720 Cmu02g0717 Cre02g1030 Cone12ag1049 Cone8ag1081 . . Lsi03g00572 Csa07g00688 . Cme01g00117 . . . . . . . . . . . . Cma19g00556 Car11g01141 Car19g00414 . . . . . . . . . . . . . . . . . . Chy01g00127 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011358 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31