Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0712 ATGGAGCAACTCAATGGAGGCTTCACAGCTGATGATCAAGAAGAAGAAGCAACTTTCATGGCTCAATTACTCTTCAACACCACAAATTCCCCTGACCCTTTCATGGCTGCCCTTCCCTATGAAACACCTTCTTCTTCAACCTTTTATAGCCTTTCTCAACAGACTAGTAATGGAAGTTATTGCAGCCAATTATTATTCCCAACTGAAAATAATAATAATTATTATTATTCTTGCAATCCCATGAATAATAATAATAATAATAATAATAATAATAATAATAATAATTCTTCATTGGGTGAGCTTGGAGATTATTACAATAACAATGGTGGTCATTTCCACACTGAAGATTATGAGGACTCTATGAATCTAGAGGTGAGTGAGAATAATAATTTTCAGCCTTGTCTTGAAGAAGCTGCCCATAACCAACTTGAGATCAATTGCAAGAAAAGATCAAGGGGAGGATTTGGGGATCATGTAGAGAAGGGGAGGAATGAGAGGCCAAAGAAAACTCAAAGGCTTATTACCTCAAGCAGCAACACTGAAGAAGATGGCAATGCTGGCCCTAGCAGGCAAAGCACAAGCAACTATTGCTCGGAAGACGAATCCAACACCTCTCTCGATCGAAACGGAGGAGCCAATAACTCGAGATCGAGTCCGAATGGTCCTACCAAATCCCGAGCCAGCAGAGGCTCAGCCACAGATCCACAGAGCCTCTATGCAAGAAAAAGAAGAGAAAGAATCAATGAGAGGTTGAGAATCTTACAGAACCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTACAACTCCAAATCAAGCTATTAAGCTCTGATGATTTATGGATGTACGCTCCGATCGCTTACAACGGAATGGATATCGGACTTAATCCGACCACCCCGAAAACACCAAAAGAGAAAGAATTATGA 963 40.29 MEQLNGGFTADDQEEEATFMAQLLFNTTNSPDPFMAALPYETPSSSTFYSLSQQTSNGSYCSQLLFPTENNNNYYYSCNPMNNNNNNNNNNNNNNSSLGELGDYYNNNGGHFHTEDYEDSMNLEVSENNNFQPCLEEAAHNQLEINCKKRSRGGFGDHVEKGRNERPKKTQRLITSSSNTEEDGNAGPSRQSTSNYCSEDESNTSLDRNGGANNSRSSPNGPTKSRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNPTTPKTPKEKEL 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8469170 8471374 + CaPI482276_02g007120.1 Cam02g0712 120454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0712 320 MobiDBLite consensus disorder prediction 150 170 - -
Cam02g0712 320 MobiDBLite consensus disorder prediction 150 244 - -
Cam02g0712 320 Gene3D - 230 288 IPR036638 GO:0046983(InterPro)
Cam02g0712 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 231 297 IPR036638 GO:0046983(InterPro)
Cam02g0712 320 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 53 300 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cam02g0712 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 231 280 IPR011598 GO:0046983(InterPro)
Cam02g0712 320 SMART finulus 237 286 IPR011598 GO:0046983(InterPro)
Cam02g0712 320 CDD bHLH_AtIND_like 232 294 - -
Cam02g0712 320 MobiDBLite consensus disorder prediction 171 235 - -
Cam02g0712 320 FunFam Basic helix-loop-helix transcription factor 232 289 - -
Cam02g0712 320 Pfam Helix-loop-helix DNA-binding domain 241 281 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0712 Cam-Chr2:8469170 Cam05g2254 Cam-Chr5:30716309 8.20E-37 dispersed
Cam10g1021 Cam-Chr10:22591753 Cam02g0712 Cam-Chr2:8469170 1.10E-45 wgd
Cam02g0712 Cam-Chr2:8469170 Cam08g2119 Cam-Chr8:26599842 5.30E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51464 PF00010 HLH 1.20E-08 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0712 - - - 0.0