Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam02g0712 | ATGGAGCAACTCAATGGAGGCTTCACAGCTGATGATCAAGAAGAAGAAGCAACTTTCATGGCTCAATTACTCTTCAACACCACAAATTCCCCTGACCCTTTCATGGCTGCCCTTCCCTATGAAACACCTTCTTCTTCAACCTTTTATAGCCTTTCTCAACAGACTAGTAATGGAAGTTATTGCAGCCAATTATTATTCCCAACTGAAAATAATAATAATTATTATTATTCTTGCAATCCCATGAATAATAATAATAATAATAATAATAATAATAATAATAATAATTCTTCATTGGGTGAGCTTGGAGATTATTACAATAACAATGGTGGTCATTTCCACACTGAAGATTATGAGGACTCTATGAATCTAGAGGTGAGTGAGAATAATAATTTTCAGCCTTGTCTTGAAGAAGCTGCCCATAACCAACTTGAGATCAATTGCAAGAAAAGATCAAGGGGAGGATTTGGGGATCATGTAGAGAAGGGGAGGAATGAGAGGCCAAAGAAAACTCAAAGGCTTATTACCTCAAGCAGCAACACTGAAGAAGATGGCAATGCTGGCCCTAGCAGGCAAAGCACAAGCAACTATTGCTCGGAAGACGAATCCAACACCTCTCTCGATCGAAACGGAGGAGCCAATAACTCGAGATCGAGTCCGAATGGTCCTACCAAATCCCGAGCCAGCAGAGGCTCAGCCACAGATCCACAGAGCCTCTATGCAAGAAAAAGAAGAGAAAGAATCAATGAGAGGTTGAGAATCTTACAGAACCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTACAACTCCAAATCAAGCTATTAAGCTCTGATGATTTATGGATGTACGCTCCGATCGCTTACAACGGAATGGATATCGGACTTAATCCGACCACCCCGAAAACACCAAAAGAGAAAGAATTATGA | 963 | 40.29 | MEQLNGGFTADDQEEEATFMAQLLFNTTNSPDPFMAALPYETPSSSTFYSLSQQTSNGSYCSQLLFPTENNNNYYYSCNPMNNNNNNNNNNNNNNSSLGELGDYYNNNGGHFHTEDYEDSMNLEVSENNNFQPCLEEAAHNQLEINCKKRSRGGFGDHVEKGRNERPKKTQRLITSSSNTEEDGNAGPSRQSTSNYCSEDESNTSLDRNGGANNSRSSPNGPTKSRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNPTTPKTPKEKEL | 320 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8469170 | 8471374 | + | CaPI482276_02g007120.1 | Cam02g0712 | 120454 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam02g0712 | 320 | MobiDBLite | consensus disorder prediction | 150 | 170 | - | - | |
Cam02g0712 | 320 | MobiDBLite | consensus disorder prediction | 150 | 244 | - | - | |
Cam02g0712 | 320 | Gene3D | - | 230 | 288 | IPR036638 | GO:0046983(InterPro) | |
Cam02g0712 | 320 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 231 | 297 | IPR036638 | GO:0046983(InterPro) | |
Cam02g0712 | 320 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 53 | 300 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Cam02g0712 | 320 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 231 | 280 | IPR011598 | GO:0046983(InterPro) | |
Cam02g0712 | 320 | SMART | finulus | 237 | 286 | IPR011598 | GO:0046983(InterPro) | |
Cam02g0712 | 320 | CDD | bHLH_AtIND_like | 232 | 294 | - | - | |
Cam02g0712 | 320 | MobiDBLite | consensus disorder prediction | 171 | 235 | - | - | |
Cam02g0712 | 320 | FunFam | Basic helix-loop-helix transcription factor | 232 | 289 | - | - | |
Cam02g0712 | 320 | Pfam | Helix-loop-helix DNA-binding domain | 241 | 281 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam02g0712 | Cam-Chr2:8469170 | Cam05g2254 | Cam-Chr5:30716309 | 8.20E-37 | dispersed | |
Cam10g1021 | Cam-Chr10:22591753 | Cam02g0712 | Cam-Chr2:8469170 | 1.10E-45 | wgd | |
Cam02g0712 | Cam-Chr2:8469170 | Cam08g2119 | Cam-Chr8:26599842 | 5.30E-36 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51464 | PF00010 | HLH | 1.20E-08 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam02g0712 | - | - | - | 0.0 |