Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0717 ATGACAAGAAGGTATTGGAACATCCATTTGGAAGAGATGATGGAAACAAGAGTTAGTCTTGGTCATGGACGGGTCCTTGTTGGCTCAGCTGCACCAATAACTAATGCCTACTGGAAAAGATTACCTATTAGACGACCTCGAATTTTTTGGCGCCCAGACTTCAACGCTATAATTCCTGTTTTGCAAACCAAGCAGACTTTTCCCCATTCATCTTCCAGGGGAAGCTTCAGCTTCGAGACCTTGAGGAAAATGGAAAAGAAGGAAACTGCTGGCGATGCCGATCGTCCATGGCAGTCTTACCACACTGTCTACACCAATGCAAAAGCCGGTATGGAAGGAGTTGACAAGGAGAAAGTGCAAAAAATTGTATATGAAATGAGTAAAGGGTCAAAATATTTTGAAAATGAGGAGCGGAAAGAGGCCGCCATCAGAGAAAAGATTGAGAGGATGCGAGCTAGGTGTGCACAGCTTGCTGCAACGGATCTTTCTCAGTATCAAAAGGTTGCAGATAAAAGAATTTTGGAGCTGGAAAGTACACGTGATCTGTCAAGGATATGGTTGCATGTAGATATGGATGCTTTCTATGCCGCTGTTGAAACTTTAAGCAATCCTTTATTAAAGGGCAAGCCGATGGCTGTTGGTAACATGTCTATGCTTTCTACTGCTAACTATGAGGCTCGAAAGTATGGTGTTCGTGCTGCTATGCCTGGTTTTATTGCACGTAGATTATGTCCAGAGTTAATTTTTGTTCCCACGGATTTCGAAAAGTATAACTATTACAGTGATTTAACTAGAAAAGTATTTCATAGGTATGATCCCAACTTCTTGGCTGCTAGTCTGGATGAAGCATACCTCGATATAACTGAAGTCTGCAAAGAAAGAGGCCTTACAAGTGAAGAAATTGCTAAGGATCTCAGAACCAGTATTTATGAAGAGACTGGTCTTACGTGTAGTGCTGGGGTTGCTGCCAACCGACTGCTTGCCAAGGTTTGCTCTGATATTAACAAACCAAATGGACAGTTCATTTTACCAAATGACCGAAGAGCTATTGTTACATTCATATCATCACTACCCATAAGAAAGATTGGTGGGATTGGAAAGGTCACTGAACATATCTTAAAGGGTGCTTTGGGGATTAATACATGTGAGGAGATGCTACTAAAGGGTGGTCACCTCTGTGCGTTGTTTTCTCAATCCTCAGCAGATTATTTCTTGTCGGTTGGGCTTGGCCTTGGGAGCACCGATACTCCACAGGTTAGATTGCGAAAGAGTATCAGCAATGAAAGAACTTTTGCAGCCACCACTGATGAAAGATTAATTTTTCAGAAACTTGCTGACCTTGCGGAGATGCTGTCAATGGACATGGACAAGGAAGGTCTAACTGGGCGGACACTGACTCTTAAACTAAAAACTGCATCCTTTGAGGTGAGAACCAGAGCTGTAACTTTGCAAAAATACATTTGCTCCAGCAGTGACATTTTGCAACATGCATCAAGGCTACTAAAGGCTGAACTGCCCATTTCTCTAAGACTAATTGGGCTGCGGATATCTCACTTCAATGAAGATGAAGCCGTTGCTGGGTCTGATCCAACCCAAACATCCATTACTAGATTTATTACATCAGGAGATGCTTCTAGAAAGATTATGAATGATTGTTTCTCCTTGAATCATGATTCTAACAATCATGGTATCCTGGATGACACCGAAATTGATGTATGCATCAATGGTACTGATTCTGAAACACACCATCAAGATAGTAGTGATCAAAGAATCGACAACAATTTCTCGAATATGGATGACAGCAACTGTACGTCCAGCAATGACGCTGAGAAGTTGGAGAAACTTAAGAACCTTTTGAGCAACGTCAGCACTGATCAGGCAAATATTTTTAATACAGTAGGAAGCACCTCAGATTCCTCAGACGCTTTAGTCCCTCGAGTCTCGAGCACGGCATGTGCTTCATCAATAAACCTTGAAGGCAATCCCAAGAATAATGTGGATACCGAAAATCAGTTCGAGGTAAGATCACCAGATAACAATGGACAGATTTGGTGGATAGATGACTACAAATGTACAATCTGTGGTGCTGAAGTACCAGTGAGTTTTGTCGATGAAAGACAAGAGCACATAGATTTCCACATTGCGGAAAAACTTCAGGAAGAAGAATCTGGCATTCGTTCAAGAACCCTTACGCCCAGGAAAAGGACTCCTGACAAGAATCTACTGTCAAGTCAAAGGAAGCACAAAAAGCAAAAGTCAACTCCAAAGAAAGAGGAGCCTGATCGAGTCTACCAACTGCAACAGTCGAAACAAGTGGAGATGACATTGAACTCTAACCTCCAACATTATCCTCCTATGCATAGGGGACAAAGCAAAACAAAAACAAGGGAAAACAATCATTCATCAATGTCAATGTGCATTGTTAATTTGATGTCGGTTCTTTCTAGATTTGATAACGAGACATGA 2466 41.77 MTRRYWNIHLEEMMETRVSLGHGRVLVGSAAPITNAYWKRLPIRRPRIFWRPDFNAIIPVLQTKQTFPHSSSRGSFSFETLRKMEKKETAGDADRPWQSYHTVYTNAKAGMEGVDKEKVQKIVYEMSKGSKYFENEERKEAAIREKIERMRARCAQLAATDLSQYQKVADKRILELESTRDLSRIWLHVDMDAFYAAVETLSNPLLKGKPMAVGNMSMLSTANYEARKYGVRAAMPGFIARRLCPELIFVPTDFEKYNYYSDLTRKVFHRYDPNFLAASLDEAYLDITEVCKERGLTSEEIAKDLRTSIYEETGLTCSAGVAANRLLAKVCSDINKPNGQFILPNDRRAIVTFISSLPIRKIGGIGKVTEHILKGALGINTCEEMLLKGGHLCALFSQSSADYFLSVGLGLGSTDTPQVRLRKSISNERTFAATTDERLIFQKLADLAEMLSMDMDKEGLTGRTLTLKLKTASFEVRTRAVTLQKYICSSSDILQHASRLLKAELPISLRLIGLRISHFNEDEAVAGSDPTQTSITRFITSGDASRKIMNDCFSLNHDSNNHGILDDTEIDVCINGTDSETHHQDSSDQRIDNNFSNMDDSNCTSSNDAEKLEKLKNLLSNVSTDQANIFNTVGSTSDSSDALVPRVSSTACASSINLEGNPKNNVDTENQFEVRSPDNNGQIWWIDDYKCTICGAEVPVSFVDERQEHIDFHIAEKLQEEESGIRSRTLTPRKRTPDKNLLSSQRKHKKQKSTPKKEEPDRVYQLQQSKQVEMTLNSNLQHYPPMHRGQSKTKTRENNHSSMSMCIVNLMSVLSRFDNET 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8528034 8540099 - CaPI482276_02g007170.1 Cam02g0717 120459

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0717 821 MobiDBLite consensus disorder prediction 723 744 - -
Cam02g0717 821 Gene3D - 203 251 - -
Cam02g0717 821 MobiDBLite consensus disorder prediction 765 788 - -
Cam02g0717 821 FunFam DNA polymerase kappa subunit 246 341 - -
Cam02g0717 821 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 420 517 IPR036775 GO:0003684(InterPro)|GO:0006281(InterPro)
Cam02g0717 821 SUPERFAMILY DNA/RNA polymerases 160 414 IPR043502 -
Cam02g0717 821 CDD PolY_Pol_IV_kappa 187 519 IPR022880 GO:0003887(InterPro)
Cam02g0717 821 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 95 758 IPR050116 GO:0003887(PANTHER)|GO:0005634(PANTHER)|GO:0042276(PANTHER)
Cam02g0717 821 Gene3D - 191 341 IPR043128 -
Cam02g0717 821 MobiDBLite consensus disorder prediction 723 800 - -
Cam02g0717 821 FunFam DNA polymerase kappa 291 415 - -
Cam02g0717 821 Pfam impB/mucB/samB family C-terminal domain 422 524 IPR017961 GO:0003684(InterPro)|GO:0006281(InterPro)
Cam02g0717 821 FunFam DNA polymerase kappa subunit 103 193 - -
Cam02g0717 821 MobiDBLite consensus disorder prediction 579 603 - -
Cam02g0717 821 Pfam impB/mucB/samB family 189 333 IPR001126 GO:0006281(InterPro)
Cam02g0717 821 FunFam DNA polymerase IV 419 525 - -
Cam02g0717 821 Pfam Ubiquitin-Binding Zinc Finger 687 721 IPR041298 -
Cam02g0717 821 Gene3D - 420 525 IPR036775 GO:0003684(InterPro)|GO:0006281(InterPro)
Cam02g0717 821 FunFam Polymerase (DNA directed) kappa 196 248 - -
Cam02g0717 821 Gene3D - 104 190 - -
Cam02g0717 821 Coils Coil 133 153 - -
Cam02g0717 821 Hamap DNA polymerase IV [dinB]. 183 535 IPR022880 GO:0003887(InterPro)
Cam02g0717 821 ProSiteProfiles Zinc finger UBZ3-type profile. 684 721 IPR041298 -
Cam02g0717 821 ProSiteProfiles UmuC domain profile. 186 366 IPR001126 GO:0006281(InterPro)
Cam02g0717 821 Gene3D - 342 415 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0717 K03511 - - csv:101212452 1176.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0684 Cam-Chr2:8088383 Cam02g0717 Cam-Chr2:8528034 2.00E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g708 . . . . . . . . Cmo19g00564 . . . . . . . Cpe15g00437 . . . . . . . Cla02g00683 Cam02g0717 Cec02g0730 Cco02g0752 Clacu02g0726 Cmu02g0724 Cre02g1036 Cone12ag1043 Cone8ag1076 . . Lsi03g00577 Csa07g00682 . Cme01g00122 . . . . . . . . . . . . Cma19g00550 . Car19g00408 . . . . . . . . . . . . . . . . . . Chy01g00132 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011596 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30