Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0744 ATGGGATTTGCCGACATCCCCTCGAACCTTTGCTGGTTGGGGCTAACCCTAACCCTGGCTTCGTCCATTGCCCCTGCAGTGGCCAATGACTACCCTAAGAACTACATTGCTGCCCACAATGCAATCCGTGCTGAGGTTGGCGTTGAGCCCCTCCATTGGAACGCCACGTTGGCTGCATATGCTCAAAATTACGCCAGCACGAAGATCGCCACTTGTGAAATGAAGCACTCTGGAGGACCCTATGGCGAAAACCTAGCAGAGGGATATGAAGCGATGACAGCAGAGACGGCGGTGAGTTTGTGGGCCGACGAGAAAAAGCATTACGACTATAATTCTAACACGTGTGTCAACGACTCTAGCCATTGCCTCCATTATACACAGCTGGTGTGGAGGAACACCAAATCTGTTGGTTGCGCCCAAGTGAAGTGCCAAAACAATTGGGTTTTTCTGATCTGCAGCTATTATCCTCCAGGCAACTATATAGGCCAACGTCCTTACTAA 501 50.5 MGFADIPSNLCWLGLTLTLASSIAPAVANDYPKNYIAAHNAIRAEVGVEPLHWNATLAAYAQNYASTKIATCEMKHSGGPYGENLAEGYEAMTAETAVSLWADEKKHYDYNSNTCVNDSSHCLHYTQLVWRNTKSVGCAQVKCQNNWVFLICSYYPPGNYIGQRPY 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9017482 9017982 + CaPI482276_02g007440.1 Cam02g0744 120486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0744 166 ProSitePatterns CRISP family signature 2. 149 160 IPR018244 GO:0005576(InterPro)
Cam02g0744 166 Gene3D CAP 30 166 IPR035940 -
Cam02g0744 166 PRINTS Allergen V5/Tpx-1 family signature 122 138 IPR001283 -
Cam02g0744 166 PRINTS Allergen V5/Tpx-1 family signature 149 162 IPR001283 -
Cam02g0744 166 PRINTS Allergen V5/Tpx-1 family signature 51 69 IPR001283 -
Cam02g0744 166 PRINTS Allergen V5/Tpx-1 family signature 97 110 IPR001283 -
Cam02g0744 166 FunFam Putative pathogenesis-related protein 1 29 166 - -
Cam02g0744 166 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 33 162 IPR001283 GO:0005615(PANTHER)
Cam02g0744 166 SMART SCP_3 30 162 IPR014044 -
Cam02g0744 166 Pfam Cysteine-rich secretory protein family 37 154 IPR014044 -
Cam02g0744 166 SUPERFAMILY PR-1-like 29 166 IPR035940 -
Cam02g0744 166 CDD CAP_PR-1 32 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0744 K13449 - - csv:101210987 295.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0742 Cam-Chr2:9012641 Cam02g0744 Cam-Chr2:9017482 6.00E-100 dispersed
Cam02g0744 Cam-Chr2:9017482 Cam02g0747 Cam-Chr2:9024750 6.00E-100 dispersed
Cam02g0743 Cam-Chr2:9015061 Cam02g0744 Cam-Chr2:9017482 6.00E-100 tandem
Cam02g0744 Cam-Chr2:9017482 Cam02g0745 Cam-Chr2:9019906 6.00E-100 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g795 . . Bda06g01147 . Bpe07g00299 . . Bma12g00311 Cmo19g00542 . . . . . . Cpe04g00337 Cpe15g00421 . . . . . . . Cla02g00708 Cam02g0744 Cec02g0756 Cco02g0783 Clacu02g0751 Cmu02g0745 Cre02g1060 Cone12ag1024 Cone8ag1057 . . Lsi03g00624 Csa07g00662 . Cme01g00141 . . . . . . . . . . . . Cma19g00533 . . . . . . . . . . . . . . . . . . . . Chy01g00152 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002300 0 1 0 0 0 16 0 4 4 0 1 3 1 1 1 2 2 0 1 3 1 1 0 3 1 10 1 2 4 0 63