Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam02g0775 ATGGACAAATCATCTATGGTGGTTTTTTCTGAGATGGGAATGGAGGATAATGGGTTTGTCAATCAGTGGCACAAGAGCTCAATGGATGAGCTTGGTATGCTCCCATTAGCAGCTACTTTTGGGGAGAATTTGCAGCATTCTTATGCTCAAACAAACATCGACCAGAAGGCTTCTTTAAACCATTCTCACAATGCCATACTTGGGTATGTGAAACAGCTGAAAAGCGATGGGTGGAGTTCATACCAGACAACTAATCATTTGCCAAACTCGCAAGTTATTGCGTATCCGACCGCATCTGTTTCAGCTTCCAACTACACGAACCAAATGGACTTCACGAGGCCAAAAGAGGAGGTTGTGTGTCCTCAGAGTATTAGCAACCTCCCTTCTGATATGTTGGTTTCTCAGGGCTCATTAGCCTACCAAAGCCATGTAACCAAGTCGAATCGTGGAACAAGAAGTCCCTCTACGAACAGTAGAATCCCCCAGGCTCAAGATCACATTCTTGCAGAGCGGAGACGGCGAGAGAAGCTCAGTCAGCGGTTTATCGCTTTATCTGCTATAGTTCCTGGCCTAAAGAAGATGGACAAGGCTTCGGTTCTTGGAGATGCCATTAAGTACCTGAAACAACTCCAAGAGAAAGTGAAGATACTTGAGGAACAAACCCGGAGGAAAGACATCGAATCTGTTGTATTCGTCAAGAAATCCCAAGTTTTTGCTGATGGAAACAACGCATCAAAAGAGGAGGATGAGCCCCTTCCCGAGATTGAAGCAAGATTTTGTGACAAAAATGTCCTTATAAGAATACACTGTGAGAAAAAGAAAGATGTCTTAGAGAAAACAATTGCTGAAATTGAAAAGTTGCACCTTACAATAGTCAACAGCAGTGTTATGTCATTTGGGAGTCTTGCTCTCGACATAACTATTATTGCGCAGATGGATAATGAATTCTGTCTGACGTTAAAGGACCTCGTGAAGAAGTTACAGTCGACTTTGCGCTCGTTTTAA 1005 43.18 MDKSSMVVFSEMGMEDNGFVNQWHKSSMDELGMLPLAATFGENLQHSYAQTNIDQKASLNHSHNAILGYVKQLKSDGWSSYQTTNHLPNSQVIAYPTASVSASNYTNQMDFTRPKEEVVCPQSISNLPSDMLVSQGSLAYQSHVTKSNRGTRSPSTNSRIPQAQDHILAERRRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQTRRKDIESVVFVKKSQVFADGNNASKEEDEPLPEIEARFCDKNVLIRIHCEKKKDVLEKTIAEIEKLHLTIVNSSVMSFGSLALDITIIAQMDNEFCLTLKDLVKKLQSTLRSF 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9551971 9553605 + CaPI482276_02g007750.1 Cam02g0775 120517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam02g0775 334 Coils Coil 200 227 - -
Cam02g0775 334 Gene3D - 160 233 IPR036638 GO:0046983(InterPro)
Cam02g0775 334 MobiDBLite consensus disorder prediction 144 163 - -
Cam02g0775 334 SMART finulus 167 216 IPR011598 GO:0046983(InterPro)
Cam02g0775 334 PANTHER BHLH TRANSCRIPTION FACTOR 11 332 IPR052610 -
Cam02g0775 334 MobiDBLite consensus disorder prediction 144 165 - -
Cam02g0775 334 CDD bHLH_AtNAI1_like 163 235 - -
Cam02g0775 334 Pfam Helix-loop-helix DNA-binding domain 165 211 IPR011598 GO:0046983(InterPro)
Cam02g0775 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983(InterPro)
Cam02g0775 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 223 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1849 Cam-Chr1:32009602 Cam02g0775 Cam-Chr2:9551971 8.80E-45 dispersed
Cam01g1850 Cam-Chr1:32029729 Cam02g0775 Cam-Chr2:9551971 1.40E-43 dispersed
Cam02g0775 Cam-Chr2:9551971 Cam05g0094 Cam-Chr5:1290782 8.30E-16 dispersed
Cam02g0775 Cam-Chr2:9551971 Cam10g0160 Cam-Chr10:3229778 1.40E-15 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51466 PF00010 HLH 2.40E-10 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam02g0775 - - - 0.0