Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam02g0840 | ATGGGAACCCTTTCCTTCCCAATTGCGTCCTCAAAATCCCGACTCTTATCGACTCCGAATCCAATTGCTTTTTCTATCCGTTTTCTTCAAACATCTTTCCCTTCTTCTGCAATTCGCCTTCGTAATTCTCCCATTCTCCATCTACGGCGACGTCTTCTCTGTTCTGCTGCAGAAACTGGTCGTTCGAATCACGATGACCACCACCATGTTCATGATCACCAGCACCACCAGCACCACCAGCACCACCACCACCACCACCACCACCACCATGGTCATCACCATTGTGATCATGATGTGGAGCTGTCTGGGCCCCAGAAAGCGGTGATTGGTTTTGCTAAAGCCATTAGGTGGACAGACTTGGCTAGCTATCTCCGGGAACACCTGCAATTATGTTGCTGCTCTATGGCTTTGTTTGTAGCTGCTGCTGTTTCCCCATATTTGGTGCCGAAGCTCATTGCAAAGCCTTTGCAAAATGCTTTCATTGTCATTGCTTTTCCTTTAGTCGGGGTCTCCTCATCCCTTGATGCTTTAACTGATATTAGTGGTGGAAAAGTAAACATCCATACACTTATGGCTCTTGCAGCCTTTGCTTCCATCTTTATGGGGAACGCCTTGGAAGGAGGACTACTACTTGCCATGTTTAATTTGTCTCACATTGCGGAAGAGTATTTTACAAGTCGTGCAATGATTGATGTCAAAGAGTTGAAGGAAAACTATCCAGACTCTGCCCTTGTTTTAGATACAAATGATGGTAAACTTCCAAATATTACAGATTTATCCTACCAAAAGGTGCCTGTCCATGATATAGAGGTGGACTCCTATATATTGGTTGGAGCTGGTGAGTTTGTGCCTATAGATTGTGAAGTTTTCCAAGGTAGTGCTACAGTCACCATTGAGCACCTAACCGGTGAAATCAAACCATTGGAGATTACGGTTGGAAGCAGAGTTCCTGGTGGTGCAAGAAACTTGGATGGTAGGATAATCGTGAAGGCAACAAAGACCTGGAAAGAGTCAACTTTGAGTCGTATAGTGAACTTGACTGAAGAAGCACAACTGAATAAACCAAGACTTCAGAGGTGGCTTGATGAATTTGGTGAGCATTATAGCAAAGCAGTTGTAGTATTGGCCATTGCTATTGCCCTCGTTGGTCCAATATTATTCAAGTGGCCATTTATTGGTACATCAGCTTGCAGAGGATCGGTTTACAGAGCTCTAGGCCTCATGGTGGCAGCATCACCTTGTGCTTTGGCAGTTGCACCATTGGCTTATGCTATTGCAATTAGTTCCTGTGCAAGAAAGGGGATATTGTTGAAAGGTGGGCGTGTATTAGATGCTTTAGCTTCTTGTCACACTATAGCTTTTGATAAAACTGGGACGTTGACTACTGGGGGGCTCATTTTCAAAGCGATTGAACCAATTTATGGACATGAGGTTGGAGAAAACAAATCAGACTTTGGTTCCTGTTGCATTCCCTGCTGTGAAGAAGAAGCTCTTGCTGTAGCAGCTGCCATGGAGAAGGGTACTACTCACCCCATTGGAAGGACATATTTGTTGATTAGTTTAGTGGTTTTAGGGGCAGGAGAAGTAATCACCAGAATTAGGACACGCCTGAAATATGCAGGATTGGTGGAAGAAGATGGTGTAGAAACAAATAGAAGAGAGGTTAGGAGCATCAGAATCAGAAATATGGAAAATAAGGAAAGAGATATAATGCCTCCCGGTTCTGGAAAGAGGTATGGAGTTGATGACAGTGGAAATGAAGGAAATCTAGAAGACTTTAAAGATGTTGCTGCCCAAGAAGACAGGTCAAGTAAGGAAACCAAACGGGAACCCAAAGGTTGTTTGAAATTGGCAGGAAAAATCGCTGAGGTGGTGGTGACACGTACAATTACACTAGCTAAGAAGATCCCATCAAATTGTAGGGCCTATGTAATAGGGATTAGGCCTACAATTGTCTTTCATATTCCAAGTTCAAAGCCCGACGTGATAGGGCCTATGTTATCTTAG | 2007 | 43.9 | MGTLSFPIASSKSRLLSTPNPIAFSIRFLQTSFPSSAIRLRNSPILHLRRRLLCSAAETGRSNHDDHHHVHDHQHHQHHQHHHHHHHHHHGHHHCDHDVELSGPQKAVIGFAKAIRWTDLASYLREHLQLCCCSMALFVAAAVSPYLVPKLIAKPLQNAFIVIAFPLVGVSSSLDALTDISGGKVNIHTLMALAAFASIFMGNALEGGLLLAMFNLSHIAEEYFTSRAMIDVKELKENYPDSALVLDTNDGKLPNITDLSYQKVPVHDIEVDSYILVGAGEFVPIDCEVFQGSATVTIEHLTGEIKPLEITVGSRVPGGARNLDGRIIVKATKTWKESTLSRIVNLTEEAQLNKPRLQRWLDEFGEHYSKAVVVLAIAIALVGPILFKWPFIGTSACRGSVYRALGLMVAASPCALAVAPLAYAIAISSCARKGILLKGGRVLDALASCHTIAFDKTGTLTTGGLIFKAIEPIYGHEVGENKSDFGSCCIPCCEEEALAVAAAMEKGTTHPIGRTYLLISLVVLGAGEVITRIRTRLKYAGLVEEDGVETNRREVRSIRIRNMENKERDIMPPGSGKRYGVDDSGNEGNLEDFKDVAAQEDRSSKETKREPKGCLKLAGKIAEVVVTRTITLAKKIPSNCRAYVIGIRPTIVFHIPSSKPDVIGPMLS | 668 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 10890245 | 10906929 | - | CaPI482276_02g008400.1 | Cam02g0840 | 120582 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam02g0840 | 668 | PANTHER | PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 | 55 | 515 | IPR051949 | - | |
| Cam02g0840 | 668 | MobiDBLite | consensus disorder prediction | 567 | 611 | - | - | |
| Cam02g0840 | 668 | NCBIfam | HAD-IC family P-type ATPase | 259 | 476 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cam02g0840 | 668 | Gene3D | - | 446 | 463 | IPR023214 | - | |
| Cam02g0840 | 668 | Gene3D | - | 464 | 515 | IPR023299 | GO:0000166(InterPro) | |
| Cam02g0840 | 668 | MobiDBLite | consensus disorder prediction | 584 | 611 | - | - | |
| Cam02g0840 | 668 | Pfam | E1-E2 ATPase | 257 | 433 | - | - | |
| Cam02g0840 | 668 | MobiDBLite | consensus disorder prediction | 71 | 93 | - | - | |
| Cam02g0840 | 668 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 455 | 514 | IPR023299 | GO:0000166(InterPro) | |
| Cam02g0840 | 668 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 455 | 461 | IPR018303 | - | |
| Cam02g0840 | 668 | MobiDBLite | consensus disorder prediction | 60 | 98 | - | - | |
| Cam02g0840 | 668 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 190 | 447 | IPR023298 | - | |
| Cam02g0840 | 668 | Gene3D | - | 225 | 351 | - | - | |
| Cam02g0840 | 668 | SUPERFAMILY | Calcium ATPase, transduction domain A | 257 | 346 | IPR008250 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam02g0780 | Cam-Chr2:9657014 | Cam02g0840 | Cam-Chr2:10890245 | 5.50E-194 | dispersed | |
| Cam02g0840 | Cam-Chr2:10890245 | Cam05g1738 | Cam-Chr5:25982904 | 7.20E-27 | dispersed | |
| Cam02g0840 | Cam-Chr2:10890245 | Cam02g1282 | Cam-Chr2:25135663 | 3.10E-22 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam02g0840 | K01534 | - | rcu:8285593 | 687.952 |